| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF023G07 | Sequence | 433 | 003829 (8) | ref|XP_011074193.1| | 5e-07 | PREDICTED: probable pectin methyltransferase QUA2 [Sesamum indicum] ref|XP_01107 | 645 | 011195 (4) | gb|ACJ85808.1| | 9e-54 | unknown [Medicago truncatula] |
| JMFF045L07 | Sequence | 644 | 003829 (8) | ref|XP_006367734.1| | 2e-52 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] | 624 | 011195 (4) | ref|XP_009760349.1| | 1e-37 | PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana sylvestris] |
| JMFF047E20 | Sequence | 445 | 003829 (8) | ref|XP_011074193.1| | 5e-06 | PREDICTED: probable pectin methyltransferase QUA2 [Sesamum indicum] ref|XP_01107 | 418 | 011195 (4) | |||
| JMSF041E16 | Sequence | 761 | 003829 (8) | ref|XP_006367734.1| | 2e-39 | PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum] | 610 | 011195 (4) | gb|ACJ85808.1| | 9e-42 | unknown [Medicago truncatula] |
This contig is upended
. : . : . : . : . : . :
rJMSF041E16+ TGGTGTGAAGCATTTCCA
rJMFF023G07+ TCGACAGGGGATTCGTTGGCGTATTACATGATTGGTGTGAAGCATTTCCA
rJMFF045L07+ TGGTGTGAAGCATTTCCA
____________________________________________________________
consensus TCGACAGGGGATTCGTTGGCGTATTACATGATTGGTGTGAAGCATTTCCA
. : . : . : . : . : . :
rJMSF041E16+ ACTTACCCANGANCGTATGATCTAGTCCANGCATACGGCCTTCTAACTCTCGAATCTGAG
rJMFF023G07+ ACTTACCCAAGAACGTATGATCTAGTCCATGCATACGGCCTTCTAACTCTCGAATCTGAG
rJMFF045L07+ ACTTACCCAAGAACGTATGATCTAGTCCATGCATACGGCCTTCTAACTCTCGAATCTGAG
____________________________________________________________
consensus ACTTACCCAAGAACGTATGATCTAGTCCATGCATACGGCCTTCTAACTCTCGAATCTGAG
. : . : . : . : . : . :
rJMSF041E16+ CAGCATAGCAGATGCGGGATGCTCGATCTGTTCATCGAGATAGACCGGTTAACTCGTCCC
rJMFF023G07+ CAGCATAGCAGATGCGGGATGCTCGATCTGTTCATCGAGATAGACCGGTTAACTCGTCCC
rJMFF045L07+ CAGCATAGCAGATGCGGGATGCTCGATCTGTTCATCGAGATAGACCGGTTAACTCGTCCC
____________________________________________________________
consensus CAGCATAGCAGATGCGGGATGCTCGATCTGTTCATCGAGATAGACCGGTTAACTCGTCCC
. : . : . : . : . : . :
rJMSF041E16+ GAG--GGATGGATTATCATACGCGACACAGTTCCCCTCGTAGATTTAGCAAGAGCTCACT
rJMFF023G07+ GAG--GGATGGATTATCATACGCGACACAGTTCCCCTCGTAGATTTAGCAAGAGCTCACT
rJMFF045L07+ GAGGTGGATGGATTATCATACGCGACACAGTTCCCCTCGTAGATTTAGCAAGAGCTCACT
____________________________________________________________
consensus GAG--GGATGGATTATCATACGCGACACAGTTCCCCTCGTAGATTTAGCAAGAGCTCACT
. : . : . : . : . : . :
rJMSF041E16+ CAACACGCCTGAAATGGGATGCTCGAGTTGTGGAGATCGAAAGCAATAGCGACGAGAAAC
rJMFF023G07+ CAACACGCCTGAAATGGGATGCTCGAGTTGTGGAGATCGAAAGCAATAGCGACGAGAAAC
rJMFF045L07+ CAACACGCCTGAAATGGGATGCTCGAGTTGTGGAGATCGAAAGCAATAGCGACGAGAAAC
____________________________________________________________
consensus CAACACGCCTGAAATGGGATGCTCGAGTTGTGGAGATCGAAAGCAATAGCGACGAGAAAC
. : . : . : . : . : . :
rJMSF041E16+ TTTTAGTTTGCCAGAAACCCATCATTAAAAGACANGCAAGCTAATTAAGCTAGAATCTGC
rJMFF023G07+ TTTTAGTTTGCCAGAAACCCATCATTAAAAGACAAGCAAGCTAATTAAGCTAGAATCTGC
rJMFF045L07+ TTTTAGTTTGCCAGAAACCCATCATTAAAAGACAAGCAAGCTAATTAAGCTAGAATCTGC
rJMFF047E20+ TTAGTTTGCCAGAAACCCATCATTAAAAGACAAGCAAGCTAATTAAGCTAGAATCTGC
____________________________________________________________
consensus TTTTAGTTTGCCAGAAACCCATCATTAAAAGACAAGCAAGCTAATTAAGCTAGAATCTGC
. : . : . : . : . : . :
rJMSF041E16+ AGGCTGTAGTATATATATATATATATACTCCATTTCCATTTTCTTGATCTGAACTAATGG
rJMFF023G07+ AGGCTGTAGTATATATATATATATATACTCCATTTCCATTTTCTTGATCTGAACTAATGG
rJMFF045L07+ AGGCTGTAGTATATATATATATATATACTCCATTTCCATTTTCTTGATCTGAACTAATGG
rJMFF047E20+ AGGCTGTAGTATATATATATATATATACTCCATTTCCATTTTCTTGATCTGAACTAATGG
____________________________________________________________
consensus AGGCTGTAGTATATATATATATATATACTCCATTTCCATTTTCTTGATCTGAACTAATGG
. : . : . : . : . : . :
rJMSF041E16+ CGATATTATATTGTTCCACCAAAAGGATGGAATTCAAAGTTGTTTCTTCAAAACAAGGAT
rJMFF023G07+ CGATATTATATTGTTCCACCAAAAGGATGGAATTCAAAGTTGTTTCTTCAAAACAAGGAT
rJMFF045L07+ CGATATTATATTGTTCCACCAAAAGGATGGAATTCAAAGTTGTTTCTTCAAAACAAGGAT
rJMFF047E20+ CGATATTATATTGTTCCACCAAAAGGATGGAATTCAAAGTTGTTTCTTCAAAACAAGGAT
____________________________________________________________
consensus CGATATTATATTGTTCCACCAAAAGGATGGAATTCAAAGTTGTTTCTTCAAAACAAGGAT
. : . : . : . : . : . :
rJMSF041E16+ GAATGAAGCAGAAGAACACAGAGCTATGGAGCCGTAAGGTCTGCATAGGATCATCCATGT
rJMFF023G07+ GAATGAAGCAGAAGAACACAGAGCTATGGAGCCGTAAGGTCTGCATAGGATCATCCATGT
rJMFF045L07+ GAATGAAGCAGAAGAACACAGAGCTATGGAGCCGTAAGGTCTGCATAGGATCATCCATGT
rJMFF047E20+ GAATGAAGCAGAAGAACACAGAGCTATGGAGCCGTAAGGTCTGCATAGGATCATCCATGT
____________________________________________________________
consensus GAATGAAGCAGAAGAACACAGAGCTATGGAGCCGTAAGGTCTGCATAGGATCATCCATGT
. : . : . : . : . : . :
rJMSF041E16+ AATTACACATTGCAGCACAGATCTGTCAAGAAAACAATGGCGATCTCTCTGCAAGTTTTT
rJMFF023G07+ AATTACACATTGCAGCACAGATCTGTCAAGAAAACAATGGCGATCTCTCTGCAAGTTTTT
rJMFF045L07+ AATTACACATTGCAGCACAGATCTGTCAAGAAAACAATGGCGATCTCTCTGCAAGTTTTT
rJMFF047E20+ AATTACACATTGCAGCACAGATCTGTCAAGAAAACAATGGCGATCTCTCTGCAAGTTTTT
____________________________________________________________
consensus AATTACACATTGCAGCACAGATCTGTCAAGAAAACAATGGCGATCTCTCTGCAAGTTTTT
. : . : . : . : . : . :
rJMSF041E16+ ACATTGTGAAGAACTGGAGATGTTAAAGAATAAGGGAATTGCAATTTGCTT
rJMFF023G07+ ACATTGTGAAGAACTGGAGATGTTAAAGAATAAGGGAATTGCAATTTGCTT
rJMFF045L07+ ACATTGTGAAGAACTGGAGATGTTAAAGAATAAGGGAATTGCAATTTGCTT
rJMFF047E20+ ACATTGTGAAGAACTGGAGATGTTAAAGAATAAGGGAATTGCAATTTGCTTTACTATATA
____________________________________________________________
consensus ACATTGTGAAGAACTGGAGATGTTAAAGAATAAGGGAATTGCAATTTGCTTTACTATATA
. : . : . : . : . : . :
rJMFF047E20+ TATTAAAGCTGGAGATGCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TATTAAAGCTGGAGATGCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG