| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019O21 | Sequence | 583 | 003173 (5) | ref|NP_001289513.1| | 1e-75 | 4-coumarate--CoA ligase-like 1 [Nicotiana sylvestris] gb|AAO25511.1| 4-coumarate | 655 | 011193 (3) | gb|KDO81878.1| | 1e-79 | hypothetical protein CISIN_1g0398371mg, partial [Citrus sinensis] |
| JMFF024K12 | Sequence | 462 | 003173 (5) | ref|NP_001289513.1| | 9e-58 | 4-coumarate--CoA ligase-like 1 [Nicotiana sylvestris] gb|AAO25511.1| 4-coumarate | 786 | 011193 (3) | ref|XP_002514904.1| | 7e-100 | AMP dependent CoA ligase, putative [Ricinus communis] gb|EEF47458.1| AMP depende |
| JMFF047A17 | Sequence | 482 | 003173 (5) | ref|NP_001289513.1| | 1e-57 | 4-coumarate--CoA ligase-like 1 [Nicotiana sylvestris] gb|AAO25511.1| 4-coumarate | 335 | 011193 (3) | gb|KDO81878.1| | 4e-11 | hypothetical protein CISIN_1g0398371mg, partial [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMFF024K12+ TGGAGATCCAAGAAAGGGCCATG
____________________________________________________________
consensus TGGAGATCCAAGAAAGGGCCATG
. : . : . : . : . : . :
rJMFF024K12+ GCATTGCCAAGAAAAACTCAGTAGGCTTCATTCTTCCCAACCTGGAAGTGAAGTTCATTG
____________________________________________________________
consensus GCATTGCCAAGAAAAACTCAGTAGGCTTCATTCTTCCCAACCTGGAAGTGAAGTTCATTG
. : . : . : . : . : . :
rJMFF019O21+ CTCTTCCAAGAAACACCCCAGGAGAGCTTTGCGTCAGAAGCC
rJMFF024K12+ ATCCTGACTCTGGTTTATCTCTTCCAAGAAACACCCCAGGAGAGCTTTGCGTCAGAAGCC
____________________________________________________________
consensus ATCCTGACTCTGGTTTATCTCTTCCAAGAAACACCCCAGGAGAGCTTTGCGTCAGAAGCC
. : . : . : . : . : . :
rJMFF019O21+ AATGTGTTATGAAAGGCTACTACAATAACGAGTATGAGACTGCACTCACAATTGATAAGG
rJMFF024K12+ AATGTGTTATGAAAGGCTACTACAATAACGAGTATGAGACTGCACTCACAATTGATAAGG
____________________________________________________________
consensus AATGTGTTATGAAAGGCTACTACAATAACGAGTATGAGACTGCACTCACAATTGATAAGG
. : . : . : . : . : . :
rJMFF019O21+ ATGGTTGGCTTCATACCGGGGACATTGGCTACATCGACGAGGATGGAGATATCTTCATTG
rJMFF024K12+ ATGGTTGGCTTCATACCGGGGACATTGGCTACATCGACGAGGATGGAGATATCTTCATTG
____________________________________________________________
consensus ATGGTTGGCTTCATACCGGGGACATTGGCTACATCGACGAGGATGGAGATATCTTCATTG
. : . : . : . : . : . :
rJMFF019O21+ TTGACCGGATCAAAGAGCTGATCAAGTTCAAGGGATTCCAGGTAGCTCCGGCTGAGTTAG
rJMFF024K12+ TTGACCGGATCAAAGAGCTGATCAAGTTCAAGGGATTCCAGGTAGCTCCGGCTGAGTTAG
____________________________________________________________
consensus TTGACCGGATCAAAGAGCTGATCAAGTTCAAGGGATTCCAGGTAGCTCCGGCTGAGTTAG
. : . : . : . : . : . :
rJMFF019O21+ AGGCGACACTTCTGAGTCATCCTTCAGTTGAAGATGCTGCTGTGGTCGGGCTACCTGACG
rJMFF024K12+ AGGCGACACTTCTGAGTCATCCTTCAGTTGAAGATGCTGCTGTGGTCGGGCTACCTGACG
____________________________________________________________
consensus AGGCGACACTTCTGAGTCATCCTTCAGTTGAAGATGCTGCTGTGGTCGGGCTACCTGACG
. : . : . : . : . : . :
rJMFF019O21+ AGGAAGCTGGGGAGGTGCCGGCAGCGTGTGTGGTTTTGTCAGCCGGAGCAAAGGACAGCG
rJMFF024K12+ AGGAAGCTGGGGAGGTGCCGGCAGCGTGTGTGGTTTTGTCAGCCGGAGCAAAGGACAGCG
____________________________________________________________
consensus AGGAAGCTGGGGAGGTGCCGGCAGCGTGTGTGGTTTTGTCAGCCGGAGCAAAGGACAGCG
. : . : . : . : . : . :
rJMFF019O21+ AGGAAGACATCATGAATTACGTGGCATCTAGCGTTGCACACTATAAGCGCGTCAGAGTTC
rJMFF024K12+ AGGAAGACATCATGAATTACGTGGCATCTAGCGTTGCACACTATAAGCGCGTCAGAGTTC
rJMFF047A17+ ATCTAGCGTTGCACACTATAAGCGCGTCAGAGTTC
____________________________________________________________
consensus AGGAAGACATCATGAATTACGTGGCATCTAGCGTTGCACACTATAAGCGCGTCAGAGTTC
. : . : . : . : . : . :
rJMFF019O21+ TTCATTTCGTTGACGCCATTCCTAAATCACATTCTGGGAAGATCATGAGGAGGGTTATCA
rJMFF024K12+ TTCATTTCGTTGACGCCATTCCTAAATCACATTCTGGGAAGATCATGAGGAGGGTTATCA
rJMFF047A17+ TTCATTTCGTTGACGCCATTCCTAAATCACATTCTGGGAAGATCATGAGGAGGGTTATCA
____________________________________________________________
consensus TTCATTTCGTTGACGCCATTCCTAAATCACATTCTGGGAAGATCATGAGGAGGGTTATCA
. : . : . : . : . : . :
rJMFF019O21+ AGGACAAAATGGTGCAGAATCTTACCACTGCATCATCCCATGATGTCCGTAAAAAGCTAT
rJMFF024K12+ AGGACAAAATGGTGCAGAATCTTACCACTGCATCATCCCATGATGTCCGTAAAAAGCTAT
rJMFF047A17+ AGGACAAAATGGTGCAGAATCTTACCACTGCATCATCCCATGATGTCCGTAAAAAGCTAT
____________________________________________________________
consensus AGGACAAAATGGTGCAGAATCTTACCACTGCATCATCCCATGATGTCCGTAAAAAGCTAT
. : . : . : . : . : . :
rJMFF019O21+ TGGCATGAAACTGACACCTATATACCTATTTCGTGGGTGTAATCTTTCACCCGAGAACCA
rJMFF024K12+ TGGCATGAAACTGACACCTATATACCTATTTCGTGGGTGTAATCTTTCACCCGAGAACCA
rJMFF047A17+ TGGCATGAAACTGACACCTATATACCTATTTCGTGGGTGTAATCTTTCACCCGAGAACCA
____________________________________________________________
consensus TGGCATGAAACTGACACCTATATACCTATTTCGTGGGTGTAATCTTTCACCCGAGAACCA
. : . : . : . : . : . :
rJMFF019O21+ AGTGAACTACCCGTGAGGGTATCTGATACCTATTTCTTGTTTAGAGTATTCATAAGCATT
rJMFF024K12+ AGTGAACTACCCGTGAGGGTATCTGATACCTATTTCTTGTTTAGAGTATTCATAAGCATT
rJMFF047A17+ AGTGAACTACCCGTGAGGGTATCTGATACCTATTTCTTGTTTAGAGTATTCATAAGCATT
____________________________________________________________
consensus AGTGAACTACCCGTGAGGGTATCTGATACCTATTTCTTGTTTAGAGTATTCATAAGCATT
. : . : . : . : . : . :
rJMFF019O21+ A
rJMFF024K12+ ATGTCAAAAGGAAATTGAGATTTTTATTGCATCAT
rJMFF047A17+ ATGTCAAAAGGAAATTGAGATTTTTATTGCATCATTGATAAAGAAATTGGTCTGACAAGC
____________________________________________________________
consensus ATGTCAAAAGGAAATTGAGATTTTTATTGCATCATTGATAAAGAAATTGGTCTGACAAGC