| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014O16 | Sequence | 473 | 003215 (19) | gb|ABZ04081.1| | 4e-64 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 805 | 011192 (14) | gb|ABZ04081.1| | 3e-88 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMFF023H02 | Sequence | 523 | 003215 (19) | gb|ABZ04081.1| | 8e-82 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 704 | 011192 (14) | gb|ABZ04081.1| | 8e-52 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMFF032N19 | Sequence | 527 | 003215 (19) | gb|ABZ04081.1| | 1e-77 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 708 | 011192 (14) | gb|ABZ04081.1| | 8e-61 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMFF044C18 | Sequence | 637 | 003215 (19) | gb|ABZ04081.1| | 1e-106 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 619 | 011192 (14) | gb|ABZ04081.1| | 4e-33 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMFF046J05 | Sequence | 622 | 003215 (19) | gb|ABZ04081.1| | 1e-102 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 497 | 011192 (14) | gb|ABZ04081.1| | 3e-07 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMFF046M21 | Sequence | 624 | 003215 (19) | gb|ABZ04081.1| | 1e-107 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 576 | 011192 (14) | gb|ABZ04081.1| | 1e-20 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMFF046P20 | Sequence | 447 | 003215 (19) | gb|ABZ04081.1| | 4e-59 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 622 | 011192 (14) | gb|ABZ04081.1| | 8e-11 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMFF049A04 | Sequence | 638 | 003215 (19) | gb|ABZ04081.1| | 3e-111 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 625 | 011192 (14) | gb|ABZ04081.1| | 1e-34 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMSF010K10 | Sequence | 189 | 003215 (19) | gb|ABZ04081.1| | 4e-17 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 713 | 011192 (14) | gb|ABZ04081.1| | 1e-71 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMSF014H02 | Sequence | 243 | 003215 (19) | gb|ABZ04081.1| | 1e-13 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 759 | 011192 (14) | gb|ABZ04081.1| | 1e-77 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMSF020H23 | Sequence | 663 | 003215 (19) | gb|ABZ04081.1| | 1e-118 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 783 | 011192 (14) | gb|ABZ04081.1| | 1e-89 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMSF028I21 | Sequence | 645 | 003215 (19) | gb|ABZ04081.1| | 3e-112 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 701 | 011192 (14) | gb|ABZ04081.1| | 1e-69 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMSF031D05 | Sequence | 670 | 003215 (19) | gb|ABZ04081.1| | 2e-119 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 728 | 011192 (14) | gb|ABZ04081.1| | 4e-73 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
| JMSF051C12 | Sequence | 727 | 003215 (19) | gb|ABZ04081.1| | 4e-133 | chloroplast heat shock protein 70-2 [Ipomoea nil] | 770 | 011192 (14) | gb|ABZ04081.1| | 2e-85 | chloroplast heat shock protein 70-2 [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMSF020H23+ GGTGTTCCTCAAATTGAGGTCAAATTTGAC
rJMSF051C12+ GAGGTCAAATTTGAC
rJMFF014O16+ TTCCTCAAATTGAGGTCAAATTTGAC
____________________________________________________________
consensus GGTGTTCCTCAAATTGAGGTCAAATTTGAC
. : . : . : . : . : . :
rJMSF020H23+ ATTGATGCCAATGGTATTCTCTCTGTTACTGCTGTTGACAAGGGCACTGGGAAGAAGCAG
rJMSF051C12+ ATTGATGCAAATGGTATTCTCTCTGNTACTGCTGTTGACAAGGGCACTGGGAAGAAGCAG
rJMSF031D05+ TGACAAGGGCACTGGGAAGAAGCAG
rJMSF028I21+ AGAAGCAG
rJMSF014H02+ TTCTCTCTGTTACTGCTGTTGACAAGGGCACTGGGAAGAAGCAG
rJMSF010K10+ GGGCACTGGGANGAAGCAG
rJMFF014O16+ ATTGATGCAAATGGTATTCTCTCTGTTACTGCTGTTGACAAGGGCACTGGGAAGAAGCAG
____________________________________________________________
consensus ATTGATGCAAATGGTATTCTCTCTGTTACTGCTGTTGACAAGGGCACTGGGAAGAAGCAG
. : . : . : . : . : . :
rJMSF020H23+ GACATCACCATTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMSF051C12+ GACATCACCATTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMSF031D05+ GACATCACCANTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMSF028I21+ GACATCACCATTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMSF014H02+ GACATCACCATTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMSF010K10+ GACATCACCATTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMFF023H02+ GGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMFF014O16+ GACATCACCATTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
rJMFF032N19+ CCCAGCGATGAGGTAGAGAGGATGGTTAGT
____________________________________________________________
consensus GACATCACCATTACAGGAGCCAGCACATTACCCAGCGATGAGGTAGAGAGGATGGTTAGT
. : . : . : . : . : . :
rJMSF020H23+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMSF051C12+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMSF031D05+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMSF028I21+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMSF014H02+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMSF010K10+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMFF023H02+ GAGGGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMFF014O16+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
rJMFF032N19+ GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
____________________________________________________________
consensus GA-GGCTGAAAGATTTGCCCAGGAGGACAAGGAGAAGAGAGATGCGATAGACACAAAGAA
. : . : . : . : . : . :
rJMSF020H23+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMSF051C12+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMSF031D05+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMSF028I21+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMSF014H02+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMSF010K10+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMFF023H02+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMFF014O16+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMFF032N19+ CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMFF044C18+ GGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
rJMFF049A04+ CAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
____________________________________________________________
consensus CCAGGCAGACTCTGTTGTTTACCAGACGGAGAAGCAGCTGAAGGAACTCGGAGAGAAAGT
. : . : . : . : . : . :
rJMSF020H23+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMSF051C12+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMSF031D05+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMSF028I21+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMSF014H02+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMSF010K10+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMFF023H02+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMFF014O16+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMFF032N19+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMFF044C18+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMFF049A04+ ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
rJMFF046M21+ CGAGGCTAAGCTTGGAGAACTNAGAGATGCAATCTC
____________________________________________________________
consensus ACCAGGCCCCGTGAAAGAGAAAGTCGAGGCTAAGCTTGGAGAACTTAGAGATGCAATCTC
. : . : . : . : . : . :
rJMSF020H23+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMSF051C12+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMSF031D05+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMSF028I21+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMSF014H02+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMSF010K10+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMFF023H02+ GGGAGGGTCAACTCAAGCCATGAAGTATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMFF014O16+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMFF032N19+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMFF046J05+ TGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMFF046P20+ GGAAGTCATGCA
rJMFF044C18+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMFF049A04+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
rJMFF046M21+ GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
____________________________________________________________
consensus GGGAGGGTCAACTCAAGCCATGAAGGATGCAATGGCCGCACTTAACCAGGAAGTCATGCA
. : . : . : . : . : . :
rJMSF020H23+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMSF051C12+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMSF031D05+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMSF028I21+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMSF014H02+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMSF010K10+ GCTGGGTCAGTCACTNTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMFF023H02+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMFF014O16+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMFF032N19+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMFF046J05+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMFF046P20+ GGTGGGTCAGTCCCTTTACAATCAGCCCAGGGCATCACCTGGCGTTGGTCCAACACCCGG
rJMFF044C18+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMFF049A04+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
rJMFF046M21+ GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
____________________________________________________________
consensus GCTGGGTCAGTCACTCTACAATCAGCCCAGTGCATCACCTGGCGCTGGTCCAACACCCGG
. : . : . : . : . : . :
rJMSF020H23+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMSF051C12+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMSF031D05+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMSF028I21+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMSF014H02+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMSF010K10+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMFF023H02+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMFF014O16+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMFF032N19+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMFF046J05+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMFF046P20+ TGG-GGGTCAGCAGGGCCATCAGAATCTTCAGGGAAGGGCCCCGATGGAGATGTCATTGA
rJMFF044C18+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMFF049A04+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
rJMFF046M21+ TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
____________________________________________________________
consensus TGGTGGGTCAGCAGGGCCATCAGAATCATCAGGGAAGGGACCCGATGGAGATGTCATTGA
. : . : . : . : . : . :
rJMSF020H23+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMSF051C12+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMSF031D05+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMSF028I21+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMSF014H02+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMSF010K10+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMFF023H02+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMFF014O16+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMFF032N19+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMFF046J05+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMFF046P20+ TGCCGATTTCCCTGCCAGCAAGTAAGACTCCCCCCCCCCCCCCCAAGGTAAATTTTGAGC
rJMFF044C18+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMFF049A04+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
rJMFF046M21+ TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
____________________________________________________________
consensus TGCCGATTTCACTGACAGCAAGTAAGACTCCCCCCACCCACCCCAAGGTAAATTTTGAGC
. : . : . : . : . : . :
rJMSF020H23+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMSF051C12+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMSF031D05+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMSF028I21+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMSF014H02+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMSF010K10+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMFF023H02+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMFF014O16+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMFF032N19+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMFF046J05+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMFF046P20+ CATTCCTCTTTTCAACTTCCCTCATTTAGTGCATGCATCCAAGGAGATGAAGCTTTTAAT
rJMFF044C18+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
rJMFF049A04+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGGTTCTAAT
rJMFF046M21+ CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
____________________________________________________________
consensus CATTCCTCTTTTCAACTTCCCTCATCTAGTGCATGCATACAAGGAGATGAAGCTTCTAAT
. : . : . : . : . : . :
rJMSF020H23+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMSF051C12+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMSF031D05+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMSF028I21+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMSF014H02+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMSF010K10+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF023H02+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF014O16+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF032N19+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF046J05+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF046P20+ TTTCATGCAACACCCTTTTTTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF044C18+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF049A04+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
rJMFF046M21+ TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
____________________________________________________________
consensus TTTCATGCAACAACCTTCTCTAGTCAAGGTTTGAGAAAGTTTGAGCATAATCGGGAGCTA
. : . : . : . : . : . :
rJMSF020H23+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMSF051C12+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMSF031D05+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMSF028I21+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMSF014H02+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMSF010K10+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF023H02+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF014O16+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF032N19+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF046J05+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF046P20+ GAAGTGAGGTGAAAACCATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF044C18+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF049A04+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
rJMFF046M21+ GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
____________________________________________________________
consensus GAAGTGAGGTGAAAAACATGGAGAGCTTTTGATATAGAATTCAATAATTGTTTTCGATGA
. : . : . : . : . : . :
rJMSF020H23+ GTGAATGGAGCGATAGAATGTTAATGAACAATGC
rJMSF051C12+ GTGAATGGAGCGATAGAATGTTAATGAACAATGCT
rJMSF031D05+ GTGAATGGAGCGATAGAATGTTAATGAACAATGC
rJMSF028I21+ GTGAATGGAGCGATAGAATGTTAATGAACAATGC
rJMSF014H02+ GTGAATGGAGCGATAGAATGTTAATGAACAATGC
rJMSF010K10+ GTGAATGGAGCGATAGAATGTTAATGAACAATGCT
rJMFF023H02+ GTGAATGGAGCGATAGAATGTTAATGAACAAT-GCTAAACTCTGTACTTCTGATAATAGT
rJMFF014O16+ GTGAATGGAGCGATAGAATGTTAATGAACAAT-GCTAAACTCTGTACTTCTGATAATAGT
rJMFF032N19+ GTGAATGGAGCGATAGAATGTTAATGAACAAT-GCTAAACTCTGTACTTCTGATAATAGT
rJMFF046J05+ GTGAATGGAGCGATAGAATGTTAATGAACAAT-GCTAAACTCTGTACTTCTGATAATAGT
rJMFF046P20+ GTGAATGGAGCGATAGAATGTTAATGACCAAT-GCTAAACTCTGTACTTCGGATAATAGT
rJMFF044C18+ GTGAATGGAGCGATAGAATGTTAATGAACAAT-GCTAAACTCTGTACTTCTGATAATAGT
rJMFF049A04+ GTGAATGGAGCGATAGAATGTTAATGAACAAT-GCTAAACTCTGTACTTCTGATAATAGT
rJMFF046M21+ GTGAATGGAGCGATAGAATGTTAATGAACAATGGTTAAACTCTGTACTTCTGATAATAGT
____________________________________________________________
consensus GTGAATGGAGCGATAGAATGTTAATGAACAATGGCTAAACTCTGTACTTCTGATAATAGT
. : . : . : . : . : . :
rJMFF014O16+ A
rJMFF032N19+ AA
rJMFF046J05+ AATGCTTTTATTGTTGTCCCAAAAAAAAAAAAAA
rJMFF046P20+ AATGCTTTTATTGTTGTC
rJMFF044C18+ AATGCTTTTATTGTTGTCCCAAAAAAAAAAAAAA
rJMFF049A04+ AATGCTTTTATTGTTGTCCCTAAAAAAAAAAAAA
rJMFF046M21+ AATGCTTTTATTGTTGTCCCAAAAAAAAAAAAAAACTCCTAGGGTGATCCGGCCATAAGG
____________________________________________________________
consensus AATGCTTTTATTGTTGTCCCAAAAAAAAAAAAAAACTCCTAGGGTGATCCGGCCATAAGG