| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF025D05 | Sequence | 608 | 011190 (11) | ref|XP_006358577.1| | 2e-55 | PREDICTED: tobamovirus multiplication protein 2A-like isoform X1 [Solanum tuber | 777 | 011190 (11) | ref|XP_004245872.1| | 2e-57 | PREDICTED: tobamovirus multiplication protein 2A [Solanum lycopersicum] |
| JMFF032C05 | Sequence | 764 | 011190 (11) | ref|XP_004245872.1| | 5e-58 | PREDICTED: tobamovirus multiplication protein 2A [Solanum lycopersicum] | |||||
| JMFF035I10 | Sequence | 421 | 011190 (11) | ref|XP_009590611.1| | 8e-22 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref | 751 | 011190 (11) | ref|XP_009590611.1| | 3e-56 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref |
| JMFF038K17 | Sequence | 420 | 011190 (11) | ref|XP_009590611.1| | 4e-24 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref | 295 | 011190 (11) | |||
| JMFF046L22 | Sequence | 419 | 011190 (11) | ref|XP_009590611.1| | 8e-22 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref | 402 | 011190 (11) | gb|KHG01123.1| | 2e-13 | hypothetical protein F383_00667 [Gossypium arboreum] |
| JMSF003A12 | Sequence | 787 | 011190 (11) | ref|XP_004245872.1| | 2e-67 | PREDICTED: tobamovirus multiplication protein 2A [Solanum lycopersicum] | |||||
| JMSF013M06 | Sequence | 786 | 011190 (11) | ref|XP_004245872.1| | 1e-58 | PREDICTED: tobamovirus multiplication protein 2A [Solanum lycopersicum] | |||||
This contig is upended
. : . : . : . : . : . :
JMFF038K17- CCTTTGCAATCTGTCAACCCCGTGATCTCTCCTACTCCCTGTTCACAAACATG
JMFF035I10- ACCCCGTGATCTCTCCTACTCCCTGTTCACAAACATG
JMFF046L22- ACCCCGTGATCTCTCCTACTCCCTGTTCAC-AACATG
JMFF025D05- ACCCCGTGATCTCTCCTACTCCCTGTTCACAAACATG
____________________________________________________________
consensus CCTTTGCAATCTGTCAACCCCGTGATCTCTCCTACTCCCTGTTCACAAACATG
. : . : . : . : . : . :
JMFF038K17- AGGATTTTGTGATTTAGCTGAGAGTTGTGCAAGGAGCTTTGAGTTGTGGGGGTTTGCTAG
JMFF035I10- AGGATTTTGTGATTTAGCTGAGAGTTGTGCAAGGAGCTTTGAGTTGTGGGGGTTTGCTAG
JMFF046L22- AGGATTTTGTGATTTAGCTGAGAGTTGTGCAAGGAGCTTTGAGTTGTGGGGGTTTGCTAG
JMFF025D05- AGGATTTTGTGATTTAGCTGAGAGTTGTGCAAGGAGCTTTGAGTTGTGGGGGTTTGCTAG
____________________________________________________________
consensus AGGATTTTGTGATTTAGCTGAGAGTTGTGCAAGGAGCTTTGAGTTGTGGGGGTTTGCTAG
. : . : . : . : . : . :
JMFF038K17- AATTTTCTAGAGAATGGCGTGTAAAGGGTGTTTGGAGTGCTTGCTGAAGCTCTTTAACTT
JMFF035I10- AATTTTCTAGAGAATGGCGTGTAAAGGGTGTTTGGAGTGCTTGCTGAAGCTCTTTAACTT
JMFF046L22- AATTTTCTAGAGAATGGCGTGTAAAGGGTGTTTGGAGTGCTTGCTGAAGCTCTTTAACTT
JMFF025D05- AATTTTCTAGAGAATGGCGTGTAAAGGGTGTTTGGAGTGCTTGCTGAAGCTCTTTAACTT
____________________________________________________________
consensus AATTTTCTAGAGAATGGCGTGTAAAGGGTGTTTGGAGTGCTTGCTGAAGCTCTTTAACTT
. : . : . : . : . : . :
JMFF038K17- CTTATTGACCCTTGTTGGACTGGGAATGATTGGATATGGTGTATATCTCTTTGTGGAATA
JMFF035I10- CTTATTGACCCTTGTTGGACTGGGAATGATTGGATATGGTGTATATCTCTTTGTGGAATA
JMFF046L22- CTTATTGACCCTTGTTGGACTGGGAATGATTGGATATGGTGTATATCTCTTTGTGGAATA
JMFF025D05- CTTATTGACCCTTGTTGGACTGGGAATGATTGGATATGGTGTATATCTCTTTGTGGAATA
____________________________________________________________
consensus CTTATTGACCCTTGTTGGACTGGGAATGATTGGATATGGTGTATATCTCTTTGTGGAATA
. : . : . : . : . : . :
JMFF038K17- CAAAAACCACTCTTCATCTGGTGATATTGAGCCTCCGTCGAGTTTTGAAGTGATGCAGCT
JMFF035I10- CAAAAACCACTCTTCATCTGGTGATATTGAGCCTCCGTCGAGTTTTGAAGTGATGCAGCT
JMFF046L22- CAAAAACCACTCTTCATCTGGTGATATTGAGCCTCCGTCGAGTTTTGAAGTGATGCAGCT
JMFF025D05- CAAAAACCACTCTTCATCTGGTGATATTGAGCCTCCGTCGAGTTTTGAAGTGATGCAGCT
____________________________________________________________
consensus CAAAAACCACTCTTCATCTGGTGATATTGAGCCTCCGTCGAGTTTTGAAGTGATGCAGCT
. : . : . : . : . : . :
JMFF038K17- AGGTCGCCCTATGCTTATGGCTGTATCTTTCGCAAACAACATATTCGATAACCTCCCAAA
JMFF035I10- AGGTCGCCCTATGCTTATGGCTGTATCTTTCGCAAACAACATATTCGATAACCTCCCAAA
JMFF046L22- AGGTCGCCCTATGCTTATGGCTGTATCTTTCGCAAACAACATATTCGATAACCTCCCAAA
JMFF025D05- AGGTCGCCCTATGCTTATGGCTGTATCTTTCGCAAACAACATATTCGATAACCTCCCAAA
____________________________________________________________
consensus AGGTCGCCCTATGCTTATGGCTGTATCTTTCGCAAACAACATATTCGATAACCTCCCAAA
. : . : . : . : . : . :
JMFF038K17- TGCTTGGTTCATATATTTGTTTATTGGTATCGGCGTAGTTATTTGNGTAATATCTTGCTT
JMFF035I10- TGCTTGGTTCATATATTTGTTTATTGGTATCGGCGTAGTTATTTGTGTAATATCTTGCTT
JMFF046L22- TGCTTGGTTCATATATTTGTTTATTGGTATCGGCGTAGTTATTTGTGTAATATCTTGCTT
JMFF025D05- TGCTTGGTTCATATATTTGTTTATTGGTATCGGCGTAGTTATTTGTGTAATATCTTGCTT
____________________________________________________________
consensus TGCTTGGTTCATATATTTGTTTATTGGTATCGGCGTAGTTATTTGTGTAATATCTTGCTT
. : . : . : . : . : . :
JMFF038K17- TGGCTGC
JMFF035I10- TGGCTGC
JMFF046L22- TGGCTGC
JMFF025D05- TGGCTGCATTGGAGGTGCGACGAGGAATGGGTGCTGCCTGTCTTGTTATTCTGTGTTAGT
rJMSF003A12+ GTTAGT
rJMFF032C05+ GTTAGT
rJMFF025D05+ GTTAGT
____________________________________________________________
consensus TGGCTGCATTGGAGGTGCGACGAGGAATGGGTGCTGCCTGTCTTGTTATTCTGTGTTAGT
. : . : . : . : . : . :
JMFF025D05- AATGTTGTTGATCTTGGTAGAACTTGGAGCTGCTGCATTTATATTCTTTGACAAAAGTTG
rJMSF003A12+ AATGTTGTTGATCTTGGTAGAACTNGGAGCTGCTGCATTTATATTCTTTGACAAAAGTTG
rJMFF032C05+ AATGTTGTTGATCTTGGTAGAACTTGGAGCTGCTGCATTTATATTCTTTGACAAAAGTTG
rJMFF035I10+ GGTAGAACTTGGAGCTGCTGCATTTATATTCTTTGACAAAAGTTG
rJMSF013M06+ TGATCNTGGTAGAACTTGGAGCTGCTGCATTTATATTCTTTGACAAAAGTTG
rJMFF025D05+ AATGTTGTTGATCTTGGTAGAACTNGGAGCTGCTGCATTTATATTCTTTGACAAAAGTNG
____________________________________________________________
consensus AATGTTGTTGATCTTGGTAGAACTTGGAGCTGCTGCATTTATATTCTTTGACAAAAGTTG
. : . : . : . : . : . :
JMFF025D05- GAAGAAGGAAATTCCAACAGACAAAACGGGTAACTTTGATACGATATATGAATTTTTGGA
rJMSF003A12+ GAAGAAGGAAATTCCAACAGACAAAACGGGTAACTTTGATACGATATATGAATTTTTGGA
rJMFF032C05+ GAAGAAGGAAATTCCAACAGACAAAACGGGTAACTTTGATACGATATATGAATTTTTGGA
rJMFF035I10+ GAAGAAGGAAATTCCAACAGACAAAACGGGTAACTTTGATACGATATATGAATTTTTGGA
rJMSF013M06+ GAAGAAGGAAATTCCAACAGACAAAACGGGTAACTTTGATACGATATATGAATTTTTGGA
rJMFF025D05+ GAAGAAGGAAATTCCAACAGACAAAACGGGTAACTTTGATACGATATATGAATTTTTGGA
____________________________________________________________
consensus GAAGAAGGAAATTCCAACAGACAAAACGGGTAACTTTGATACGATATATGAATTTTTGGA
. : . : . : . : . : . :
JMFF025D05- AGACCACTGGGACAT
rJMSF003A12+ AGACCACTGGGACATTGCTAGATGGGTGGCCCTTGGGGCAGTAGTGTTGGAGGCCCTTGT
rJMFF032C05+ AGACCACTGGGACATTGCTAGATGGGTGGCCCTTGGGGCAGTAGTGTTGGAGGCCCTTGT
rJMFF035I10+ AGACCACTGGGACATTGCTAGATGGGTGGCCCTTGGGGCAGTAGTGTTGGAGGCCCTTGT
rJMSF013M06+ AGACCACTGGGACATTGCTAGATGGGTGGCCCTTGGGGCAGTAGTGTTGGAGGCCCTTGT
rJMFF025D05+ AGACCACTGGGACATTGCTAGATGGGTGGCCCTTGGGGCAGTAGTGTTGGAGGCCCTTGT
____________________________________________________________
consensus AGACCACTGGGACATTGCTAGATGGGTGGCCCTTGGGGCAGTAGTGTTGGAGGCCCTTGT
. : . : . : . : . : . :
rJMSF003A12+ ATTCTTGTTGGCACTTGTGGTAAGGGCAGCGAACAGACCGGCCGACTATGATAGCGATGA
rJMFF032C05+ ATTCTTGTTGGCACTTGTGGTAAGGGCAGCGAACAGACCGGCCGACTATGATAGCGATGA
rJMFF035I10+ ATTCTTGTTGGCACTTGTGGTAAGGGCAGCGAACAGACCGGCCGACTATGATAGCGATGA
rJMSF013M06+ ATTCTTGTTGGCACTTGTGGTAAGGGCAGCGAACAGACCGGCCGACTATGATAGCGATGA
rJMFF025D05+ ATTCTTGTTGGCACTTGTGGTAAGGGCAGCGAACAGACCGGCCGACTATGATAGCGATGA
____________________________________________________________
consensus ATTCTTGTTGGCACTTGTGGTAAGGGCAGCGAACAGACCGGCCGACTATGATAGCGATGA
. : . : . : . : . : . :
rJMSF003A12+ TGAGTATATAGGCGGCGGTCCTAGACAACAGATCCGCCAGCCACTGGTTAACAACAACTG
rJMFF032C05+ TGAGTATATAGGCGGCGGTCCTAGGCAACAGATCCGCCAGCCACTGGTTAACAACAACTG
rJMFF035I10+ TGAGTATATAGGCGGCGGTCCTAGACAACAGATCCGCCAGCCACTGGTTAACAACAACTG
rJMSF013M06+ TGAGTATATAGGCGGCGGTCCTAGACAACAGATCCGCCAGCCACTGGTTAACAACAACTG
rJMFF025D05+ TGAGTATATAGGCGGCGGTCCTAGACAACAGATCCGCCAGCCACTGGTTAACAACAACTG
____________________________________________________________
consensus TGAGTATATAGGCGGCGGTCCTAGACAACAGATCCGCCAGCCACTGGTTAACAACAACTG
. : . : . : . : . : . :
rJMSF003A12+ GCAATCCTCTAGCCCTCAAAGCGCACCTGTTGCTGCTGACTCTCGGGCGCCTAGTCGGAC
rJMFF032C05+ GCAATCCTCTAGCCCTCAAAGCGCACCTGTTGCTGCTGACTCTCGGGCGCCTAGTCGGAC
rJMFF035I10+ GCAATCCTCTAGCCCTCAAAGCGCACCTGTTGCTGCTGACTCTCGGGCGCCTAGTCGGAC
rJMSF013M06+ GCAATCCTCTAGCCCTCAAAGCGCACCTGTTGCTGCTGACTCTCGGGCGCCTAGTCGGAC
rJMFF025D05+ GCAATCCTCTAGCCCTCAAAGCGCACCTGTTGCTGCTGACTCTCGGGCGCCTAGTCGGAC
____________________________________________________________
consensus GCAATCCTCTAGCCCTCAAAGCGCACCTGTTGCTGCTGACTCTCGGGCGCCTAGTCGGAC
. : . : . : . : . : . :
rJMSF003A12+ TGATGCATGGAGTGCTCGTATGAGGGAAAAGTACGGGCTTGACACTTCGGAGTTTACATA
rJMFF032C05+ TGATGCATGGAGTGCTCGTATGAGGGAAAAGTACGGGCTTGACACTTCGGGGTTTACATA
rJMFF035I10+ TGATGCATGGAGTGCTCGTATGAGGGAAAAGTACGGGCTTGACACTTCGGAGTTTACATA
rJMSF013M06+ TGATGCATGGAGTGCTCGTATGAGGGAAAAGTACGGGCTTGACACTTCGGAGTTTACATA
rJMFF025D05+ TGATGCATGGAGTGCTCGTATGAGGGAAAAGTACGGGCTTGACACTTCGGAGTTTACATA
rJMFF046L22+ TATGAGGGAAAAGTACGGGCTTGACACTTCGGAGTTTACATA
____________________________________________________________
consensus TGATGCATGGAGTGCTCGTATGAGGGAAAAGTACGGGCTTGACACTTCGGAGTTTACATA
. : . : . : . : . : . :
rJMSF003A12+ CAATCCATCGGAGCCAAACCGGCACCAACAAACAGCTGCACAACCTCCAGAGGAGAGTAG
rJMFF032C05+ CAATCCATCGGAGCCAAACCGGCACCAACAAACAGCTGCACAACCTCCAGAGGAGAGTAG
rJMFF035I10+ CAATCCATCGGAGCCAAACCGGCACCAACAAACAGCTGCACAACCTCCAGAGGAGAGTAG
rJMSF013M06+ CAATCCATCGGAGCCAAACCGGCACCAACAAACAGCTGCACAACCTCCAGAGGAGAGTAG
rJMFF038K17+ AAACAGCTGCACAACCTCCAGAGGAGAGTAG
rJMFF025D05+ CAATCCATCGGAGCCAAACCGGCACCAACAAACAGCTGCACAACCTCCAGAGGAGAGTAG
rJMFF046L22+ CAATCCATCGGAGCCAAACCGGCACCAACAAACAGCTGCACAACCTCCAGAGGAGAGTAG
____________________________________________________________
consensus CAATCCATCGGAGCCAAACCGGCACCAACAAACAGCTGCACAACCTCCAGAGGAGAGTAG
. : . : . : . : . : . :
rJMSF003A12+ TCGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
rJMFF032C05+ TCGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
rJMFF035I10+ TCGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
rJMSF013M06+ TCGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
rJMFF038K17+ TNGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
rJMFF025D05+ TCGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
rJMFF046L22+ TCGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
____________________________________________________________
consensus TCGATGTACTATAATGTGACGATATAATATGGTTTGCGTCGTGGAGCAACCGTGTTGTTA
. : . : . : . : . : . :
rJMSF003A12+ TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTATGGTTGTTTGTATCTATCC
rJMFF032C05+ TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTATGGTTGTTTGTATCTATCC
rJMFF035I10+ TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTATGGTTGTTTGTATCTATCC
rJMSF013M06+ TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTAAGGTTGTTTGTATCTATCC
rJMFF038K17+ TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTATGGTTGTTTGTATCTATCC
rJMFF025D05+ TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTATGGTTGTTTGTATCTATCC
rJMFF046L22+ TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTATGGTTGTTTGTATCTATCC
____________________________________________________________
consensus TTCATGTTCGCTTTTGAGTTGATTTCTTTTAGTTGATCGTATGGTTGTTTGTATCTATCC
. : . : . : . : . : . :
rJMSF003A12+ CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTT-CCGGTTTATTATTTGGTATCTTT
rJMFF032C05+ CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTTGCGGGTTTATTATTTGGTATCTTT
rJMFF035I10+ CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTTGCGGGTTTATTATTTGGTATCTTT
rJMSF013M06+ CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTTGCGGGTTTATTATTTGGTATCTTT
rJMFF038K17+ CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTTGCGGGTTTATTATTTGGTATCTTT
rJMFF025D05+ CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTTGCGGGTTTATTATTTGGTATCTTT
rJMFF046L22+ CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTTGCGGGTTTATTATTTGGTATCTTT
____________________________________________________________
consensus CTCTGTTATGGAGTTAGTGTAAAAATCGAGTCTTTTGCGGGTTTATTATTTGGTATCTTT
. : . : . : . : . : . :
rJMSF003A12+ TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
rJMFF032C05+ TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
rJMFF035I10+ TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
rJMSF013M06+ TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
rJMFF038K17+ TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
rJMFF025D05+ TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
rJMFF046L22+ TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
____________________________________________________________
consensus TGTTTGGTCGTTGTGTACGATGTACAAATTGAATGTTTTGTGAATTTATGTTGTCTTGTG
. : . : . : . : . : . :
rJMSF003A12+ TTCTCTCTAAATT
rJMFF032C05+ TTCTCTCTAAATTTCGAGAGACGTTTCTTTTTATTAAA
rJMFF035I10+ TTCTCTCTAAATTTCGAGAGACGT
rJMSF013M06+ TTCTCTCTAAATTTCGAGAGACGTT
rJMFF038K17+ TTCTCTCTAAATTTCGAGAGACGT
rJMFF025D05+ TTCTCTCTAAATTTCGAGAGACGTTTCTTTTTATTAAATGGTT
rJMFF046L22+ TTCTCTCTAAATTTCGAGAGACGTTTCTTTTTATTAAATGGTTTGAGAGTTTATTTTGCC
____________________________________________________________
consensus TTCTCTCTAAATTTCGAGAGACGTTTCTTTTTATTAAATGGTTTGAGAGTTTATTTTGCC