Contig 011179:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008A19Sequence340011483 (4)648011179 (11)gb|ADN92994.2|8e-41TCP family transcription factor TCP4 [Ipomoea nil]
JMFF010D12Sequence342011483 (4)770011179 (11)gb|ADN92994.2|1e-41TCP family transcription factor TCP4 [Ipomoea nil]
JMFF015N16Sequence597011179 (11)gb|ADN92994.2|2e-35TCP family transcription factor TCP4 [Ipomoea nil]577011179 (11)gb|ADN92994.2|2e-35TCP family transcription factor TCP4 [Ipomoea nil]
JMFF045G21Sequence638011483 (4)588011179 (11)gb|ADN92994.2|1e-13TCP family transcription factor TCP4 [Ipomoea nil]
JMFF048D12Sequence514011179 (11)gb|ADN92994.2|2e-36TCP family transcription factor TCP4 [Ipomoea nil]370011179 (11)
JMFF050J01Sequence602011179 (11)gb|ADN92994.2|2e-35TCP family transcription factor TCP4 [Ipomoea nil]601011179 (11)gb|ADN92994.2|6e-30TCP family transcription factor TCP4 [Ipomoea nil]
JMFN042O08Sequence630011179 (11)gb|ADN92994.2|8e-41TCP family transcription factor TCP4 [Ipomoea nil]
JMSF010G06Sequence344011483 (4)767011179 (11)gb|ADN92994.2|2e-43TCP family transcription factor TCP4 [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF010G06+ TGAGCACAATCAGCATAGGTTTCCGGGTTGGCACGGTGGTGGTGGTGG
rJMFF010D12+ ACAATCAGCATAGGTTTCCGGGTTGGCACGGTGGTGGTGGTGG
                      ____________________________________________________________
consensus TGAGCACAATCAGCATAGGTTTCCGGGTTGGCACGGTGGTGGTGGTGG
 
. : . : . : . : . : . :
rJMSF010G06+ AGACGCCGCTGCTGCCGCCTCCTGCTCCGCTAGCGGCAGTGGTGGCGCAGCAGCTTCAGC
rJMFF010D12+ AGACGCCGCTGCTGCCGCCTCCTGCTCCGCTAGCGGCAGTGGTGGCGCAGCAGCTTCAGC
                      ____________________________________________________________
consensus AGACGCCGCTGCTGCCGCCTCCTGCTCCGCTAGCGGCAGTGGTGGCGCAGCAGCTTCAGC
 
. : . : . : . : . : . :
rJMSF010G06+ AACAGGAGGATACTTGTTCAATTCCCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
rJMFF010D12+ AACAGGAGGATACTTGTTCAATTCCCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
JMFN042O08- CCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
rJMFF008A19+ CCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
                      ____________________________________________________________
consensus AACAGGAGGATACTTGTTCAATTCCCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
 
. : . : . : . : . : . :
rJMSF010G06+ GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
rJMFF010D12+ GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
JMFF048D12- TCCAGTTACTCGCCTTCGGT
JMFN042O08- GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
rJMFF015N16+ GTCCGGTTACTCGCCTTCGGT
rJMFF008A19+ GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
JMFF015N16- GTTACTCGCCTTCGGT
JMFF050J01- GTCCGGTTACTCGCCTTCGGT
                      ____________________________________________________________
consensus GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
 
. : . : . : . : . : . :
rJMSF010G06+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF010D12+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFF048D12- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFN042O08- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF015N16+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF008A19+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFF015N16- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFF050J01- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF050J01+ TGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
                      ____________________________________________________________
consensus TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
 
. : . : . : . : . : . :
rJMSF010G06+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF010D12+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFF048D12- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFN042O08- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF015N16+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF008A19+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFF015N16- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFF050J01- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF050J01+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF045G21+ ACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
                      ____________________________________________________________
consensus GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
 
. : . : . : . : . : . :
rJMSF010G06+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF010D12+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFF048D12- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFN042O08- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF015N16+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF008A19+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFF015N16- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFF050J01- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF050J01+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF045G21+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
                      ____________________________________________________________
consensus GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
 
. : . : . : . : . : . :
rJMSF010G06+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF010D12+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFF048D12- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFN042O08- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF015N16+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF008A19+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFF015N16- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFF050J01- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF050J01+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF048D12+ CCA
rJMFF045G21+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
                      ____________________________________________________________
consensus TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
 
. : . : . : . : . : . :
rJMSF010G06+ ATAATCTCTCGTTTCTTCTCTCCA------AGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF010D12+ ATAATCTCTCGTTTCTTCTCTCCA------AGGATATGATGAATTAGTTATGCAAGAGAT
JMFF048D12- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
JMFN042O08- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF015N16+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF008A19+ ATAATCTCTCGTTTCTTCTCTCCA------AGGATATGATGAATTAGTTATGCAAGAGAT
JMFF015N16- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
JMFF050J01- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF050J01+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF048D12+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF045G21+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
                      ____________________________________________________________
consensus ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
 
. : . : . : . : . : . :
rJMSF010G06+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF010D12+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFF048D12- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFN042O08- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF015N16+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF008A19+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFF015N16- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFF050J01- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF050J01+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF048D12+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF045G21+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
                      ____________________________________________________________
consensus CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
 
. : . : . : . : . : . :
rJMSF010G06+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF010D12+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFF048D12- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFN042O08- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF015N16+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF008A19+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFF015N16- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFF050J01- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF050J01+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF048D12+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF045G21+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
                      ____________________________________________________________
consensus GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
 
. : . : . : . : . : . :
rJMSF010G06+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF010D12+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
JMFF048D12- TTAGTTCATGTCGATTAATAATCAGTTTTACATTTGTGTATGATTGAGTGGGCTT
JMFN042O08- TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF015N16+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF008A19+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
JMFF015N16- TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
JMFF050J01- TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF050J01+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF048D12+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF045G21+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
                      ____________________________________________________________
consensus TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
 
. : . : . : . : . : . :
rJMSF010G06+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF010D12+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
JMFN042O08- GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATC
rJMFF015N16+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF008A19+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
JMFF015N16- GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
JMFF050J01- GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF050J01+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF048D12+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF045G21+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
                      ____________________________________________________________
consensus GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
 
. : . : . : . : . : . :
rJMSF010G06+ CT
rJMFF010D12+ CTTACTCCTTGCT
rJMFF015N16+ CTTACTCCTTGCT
rJMFF008A19+ CTTACTCCTTGCTT
JMFF015N16- CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTT
JMFF050J01- CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCC
rJMFF050J01+ CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAA
rJMFF048D12+ CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAA
rJMFF045G21+ CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAAGCTATGTTTAGTACGTGT
                      ____________________________________________________________
consensus CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAAGCTATGTTTAGTACGTGT
 
. : . : . : . : . : . :
rJMFF045G21+ TTTCATTGCTTXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus TTTCATTGCTTNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG