| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008A19 | Sequence | 340 | 011483 (4) | 648 | 011179 (11) | gb|ADN92994.2| | 8e-41 | TCP family transcription factor TCP4 [Ipomoea nil] | |||
| JMFF010D12 | Sequence | 342 | 011483 (4) | 770 | 011179 (11) | gb|ADN92994.2| | 1e-41 | TCP family transcription factor TCP4 [Ipomoea nil] | |||
| JMFF015N16 | Sequence | 597 | 011179 (11) | gb|ADN92994.2| | 2e-35 | TCP family transcription factor TCP4 [Ipomoea nil] | 577 | 011179 (11) | gb|ADN92994.2| | 2e-35 | TCP family transcription factor TCP4 [Ipomoea nil] |
| JMFF045G21 | Sequence | 638 | 011483 (4) | 588 | 011179 (11) | gb|ADN92994.2| | 1e-13 | TCP family transcription factor TCP4 [Ipomoea nil] | |||
| JMFF048D12 | Sequence | 514 | 011179 (11) | gb|ADN92994.2| | 2e-36 | TCP family transcription factor TCP4 [Ipomoea nil] | 370 | 011179 (11) | |||
| JMFF050J01 | Sequence | 602 | 011179 (11) | gb|ADN92994.2| | 2e-35 | TCP family transcription factor TCP4 [Ipomoea nil] | 601 | 011179 (11) | gb|ADN92994.2| | 6e-30 | TCP family transcription factor TCP4 [Ipomoea nil] |
| JMFN042O08 | Sequence | 630 | 011179 (11) | gb|ADN92994.2| | 8e-41 | TCP family transcription factor TCP4 [Ipomoea nil] | |||||
| JMSF010G06 | Sequence | 344 | 011483 (4) | 767 | 011179 (11) | gb|ADN92994.2| | 2e-43 | TCP family transcription factor TCP4 [Ipomoea nil] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF010G06+ TGAGCACAATCAGCATAGGTTTCCGGGTTGGCACGGTGGTGGTGGTGG
rJMFF010D12+ ACAATCAGCATAGGTTTCCGGGTTGGCACGGTGGTGGTGGTGG
____________________________________________________________
consensus TGAGCACAATCAGCATAGGTTTCCGGGTTGGCACGGTGGTGGTGGTGG
. : . : . : . : . : . :
rJMSF010G06+ AGACGCCGCTGCTGCCGCCTCCTGCTCCGCTAGCGGCAGTGGTGGCGCAGCAGCTTCAGC
rJMFF010D12+ AGACGCCGCTGCTGCCGCCTCCTGCTCCGCTAGCGGCAGTGGTGGCGCAGCAGCTTCAGC
____________________________________________________________
consensus AGACGCCGCTGCTGCCGCCTCCTGCTCCGCTAGCGGCAGTGGTGGCGCAGCAGCTTCAGC
. : . : . : . : . : . :
rJMSF010G06+ AACAGGAGGATACTTGTTCAATTCCCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
rJMFF010D12+ AACAGGAGGATACTTGTTCAATTCCCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
JMFN042O08- CCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
rJMFF008A19+ CCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
____________________________________________________________
consensus AACAGGAGGATACTTGTTCAATTCCCCACAGCAGCCACTGTTCCAGCAGTTGTTTGGTGG
. : . : . : . : . : . :
rJMSF010G06+ GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
rJMFF010D12+ GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
JMFF048D12- TCCAGTTACTCGCCTTCGGT
JMFN042O08- GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
rJMFF015N16+ GTCCGGTTACTCGCCTTCGGT
rJMFF008A19+ GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
JMFF015N16- GTTACTCGCCTTCGGT
JMFF050J01- GTCCGGTTACTCGCCTTCGGT
____________________________________________________________
consensus GCAGAACCAGTTTTTTCCTTCTCAGAGGGGACCCCTTCAGTCCAGTTACTCGCCTTCGGT
. : . : . : . : . : . :
rJMSF010G06+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF010D12+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFF048D12- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFN042O08- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF015N16+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF008A19+ TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFF015N16- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
JMFF050J01- TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
rJMFF050J01+ TGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
____________________________________________________________
consensus TCGTGCTTGGATCGACCCATCACCCGCGATAGCCATTGCCAGTGTTGATCCGAACCAGCA
. : . : . : . : . : . :
rJMSF010G06+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF010D12+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFF048D12- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFN042O08- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF015N16+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF008A19+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFF015N16- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
JMFF050J01- GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF050J01+ GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
rJMFF045G21+ ACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
____________________________________________________________
consensus GCACTACCAGCTACCCATTTACCCATCATCACTATCGGGTATAGGATTCTCCACGGGAGT
. : . : . : . : . : . :
rJMSF010G06+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF010D12+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFF048D12- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFN042O08- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF015N16+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF008A19+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFF015N16- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
JMFF050J01- GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF050J01+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
rJMFF045G21+ GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
____________________________________________________________
consensus GGGGGAATTCTCTGGGTTTCGCATTCCTGCACGAATCCAAGGTGAAGAAGAGGAGCACGA
. : . : . : . : . : . :
rJMSF010G06+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF010D12+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFF048D12- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFN042O08- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF015N16+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF008A19+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFF015N16- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
JMFF050J01- TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF050J01+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
rJMFF048D12+ CCA
rJMFF045G21+ TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
____________________________________________________________
consensus TGGCATTTCCGACAAGCCATCCTCTGCTTCCTCTGACTCCCGTCGTTGAATTAGCTCCCA
. : . : . : . : . : . :
rJMSF010G06+ ATAATCTCTCGTTTCTTCTCTCCA------AGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF010D12+ ATAATCTCTCGTTTCTTCTCTCCA------AGGATATGATGAATTAGTTATGCAAGAGAT
JMFF048D12- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
JMFN042O08- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF015N16+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF008A19+ ATAATCTCTCGTTTCTTCTCTCCA------AGGATATGATGAATTAGTTATGCAAGAGAT
JMFF015N16- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
JMFF050J01- ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF050J01+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF048D12+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
rJMFF045G21+ ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
____________________________________________________________
consensus ATAATCTCTCGTTTCTTCTCTCCAAGTTGCAGGATATGATGAATTAGTTATGCAAGAGAT
. : . : . : . : . : . :
rJMSF010G06+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF010D12+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFF048D12- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFN042O08- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF015N16+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF008A19+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFF015N16- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
JMFF050J01- CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF050J01+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF048D12+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
rJMFF045G21+ CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
____________________________________________________________
consensus CTTGGAGGCAGAGAAGGAAAGGGGAGTTTGCCGAGTCTAAACCAATGGCGGTCACCCGAG
. : . : . : . : . : . :
rJMSF010G06+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF010D12+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFF048D12- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFN042O08- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF015N16+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF008A19+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFF015N16- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
JMFF050J01- GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF050J01+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF048D12+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
rJMFF045G21+ GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
____________________________________________________________
consensus GTAGAAGACTTGTTGGCATAGTTTCAGGTTTTTCTATCCCGGGCATTATTGTTATCTGTA
. : . : . : . : . : . :
rJMSF010G06+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF010D12+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
JMFF048D12- TTAGTTCATGTCGATTAATAATCAGTTTTACATTTGTGTATGATTGAGTGGGCTT
JMFN042O08- TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF015N16+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF008A19+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
JMFF015N16- TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
JMFF050J01- TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF050J01+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF048D12+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
rJMFF045G21+ TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
____________________________________________________________
consensus TTAGTTCATGTCGATTAATATCAAGTTTTACATTTGTGTATGATTGAGTGGGCTTCCCGA
. : . : . : . : . : . :
rJMSF010G06+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF010D12+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
JMFN042O08- GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATC
rJMFF015N16+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF008A19+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
JMFF015N16- GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
JMFF050J01- GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF050J01+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF048D12+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
rJMFF045G21+ GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
____________________________________________________________
consensus GCTCAACTTTGTCTAGTTTGAGGATTATGTTGTGTTTCTATTGCCATCCTAATCAGGGAG
. : . : . : . : . : . :
rJMSF010G06+ CT
rJMFF010D12+ CTTACTCCTTGCT
rJMFF015N16+ CTTACTCCTTGCT
rJMFF008A19+ CTTACTCCTTGCTT
JMFF015N16- CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTT
JMFF050J01- CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCC
rJMFF050J01+ CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAA
rJMFF048D12+ CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAA
rJMFF045G21+ CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAAGCTATGTTTAGTACGTGT
____________________________________________________________
consensus CTTACTCCTTGCTTTGAATTTTATGAATTTAGTGTTTCCTAAGCTATGTTTAGTACGTGT
. : . : . : . : . : . :
rJMFF045G21+ TTTCATTGCTTXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TTTCATTGCTTNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG