| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF044I17 | Sequence | 628 | 011173 (6) | ref|XP_006347268.1| | 4e-99 | PREDICTED: protein argonaute 4-like isoform X1 [Solanum tuberosum] ref|XP_006347 | 634 | 011173 (6) | ref|NP_001266156.1| | 3e-44 | uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A |
| JMFN008E17 | Sequence | 470 | 011173 (6) | ref|NP_001266156.1| | 1e-16 | uncharacterized protein LOC101256023 [Solanum lycopersicum] gb|AFV15381.1| AGO4A | |||||
| JMFS026H01 | Sequence | 627 | 011173 (6) | ref|XP_002527764.1| | 5e-49 | eukaryotic translation initiation factor 2c, putative [Ricinus communis] gb|EEF | |||||
| JMSF012B06 | Sequence | 359 | 004840 (63) | ref|XP_009591976.1| | 1e-26 | PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis] | 771 | 011173 (6) | ref|XP_006347268.1| | 2e-92 | PREDICTED: protein argonaute 4-like isoform X1 [Solanum tuberosum] ref|XP_006347 |
| JMSF021K09 | Sequence | 629 | 004840 (63) | ref|XP_009591976.1| | 4e-70 | PREDICTED: protein argonaute 4 [Nicotiana tomentosiformis] | 807 | 011173 (6) | ref|XP_003601297.1| | 5e-103 | Protein argonaute 4A [Medicago truncatula] |
This contig is upended
. : . : . : . : . : . :
JMFF044I17- GTCAGTGAATCCCAATT
rJMSF021K09+ AAAAGGAAGCCTGATCNAATCATAATCTTCAGGGATGGTGTCAGTGAATCCCAATT
rJMSF012B06+ GTCAGNGAATCCCNATT
____________________________________________________________
consensus AAAAGGAAGCCTGATCNAATCATAATCTTCAGGGATGGTGTCAGTGAATCCCAATT
. : . : . : . : . : . :
JMFF044I17- CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTTGCAAATTTCTTGACGA
rJMSF021K09+ CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTTGCAAATTTCTNGACGA
rJMSF012B06+ CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTNGCAAATTTCTTGACGA
____________________________________________________________
consensus CAATCAAGTACTGAATATTGAGCTTGATCAGATCATTGAGGCTTGCAAATTTCTTGACGA
. : . : . : . : . : . :
JMFF044I17- GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
rJMSF021K09+ GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
rJMSF012B06+ GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
____________________________________________________________
consensus GAAATGGTCACCCAAGTTTGTGGTTATTATTGCTCAGAAGAATCATCATACTAAGTTCTT
. : . : . : . : . : . :
JMFF044I17- TCAGTCTTCGTCTCCTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
rJMSF021K09+ TCAGTCTTCGTCTCCTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
rJMSF012B06+ TCAGTCTTCGTCTCNTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
____________________________________________________________
consensus TCAGTCTTCGTCTCCTGATAATGTTCCACCAGGGACAATCATAGACAATAAAGTTTGCCA
. : . : . : . : . : . :
JMFF044I17- TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
rJMSF021K09+ TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
rJMSF012B06+ TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
JMFS026H01- CTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
rJMFF044I17+ GTGCCCATGCAGGAATGATTGGGACCACAAGACC
____________________________________________________________
consensus TCCTAGGAACAATGACTTCTACTTGTGTGCCCATGCAGGAATGATTGGGACCACAAGACC
. : . : . : . : . : . :
JMFF044I17- AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
rJMSF021K09+ AACTCATTACCATGTTTTTCTGGATGAGGTNGGGTNTTCTGCAGATGAGCTACAAGAACT
rJMSF012B06+ AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
JMFS026H01- AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
rJMFF044I17+ AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
____________________________________________________________
consensus AACTCATTACCATGTTCTTCTGGATGAGGTTGGGTTTTCTGCAGATGAGCTACAAGAACT
. : . : . : . : . : . :
JMFF044I17- TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
rJMSF021K09+ TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
rJMSF012B06+ TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
JMFN008E17- CGAAGCACCACTGCCATATCAGTTGTTGCCCC
JMFS026H01- TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
rJMFF044I17+ TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
____________________________________________________________
consensus TGTGCACAACTTATCCTATGTGTACCAACGAAGCACCACTGCCATATCAGTTGTTGCCCC
. : . : . : . : . : . :
JMFF044I17- AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
rJMSF021K09+ AATATGCTATGCTCATTTGGNTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
rJMSF012B06+ AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
JMFN008E17- AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
JMFS026H01- AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
rJMFF044I17+ AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
____________________________________________________________
consensus AATATGCTATGCTCATTTGGCTGCGACCCAGTTGGGACAATGGATGAAATTTGAGGGCTC
. : . : . : . : . : . :
JMFF044I17- ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
rJMSF021K09+ ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
rJMSF012B06+ ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
JMFN008E17- ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
JMFS026H01- ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
rJMFF044I17+ ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
____________________________________________________________
consensus ATCTGACACATCTTCAAACCCCGGTGGTGGTGGTGGGAAGAATGGTGGTCCAGCTCCTGT
. : . : . : . : . : . :
JMFF044I17- TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTT-AAAAGG
rJMSF021K09+ TCNTCAGTTGCTTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
rJMSF012B06+ TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
JMFN008E17- TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
JMFS026H01- TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
rJMFF044I17+ TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
____________________________________________________________
consensus TCCTCAGTTGCCTAAGCTGGAGGAGAAAGTGTCCAGTTCAATGTTCTTCTGTTAAAAAGG
. : . : . : . : . : . :
JMFF044I17- CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
rJMSF021K09+ CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
rJMSF012B06+ CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
JMFN008E17- CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
JMFS026H01- CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
rJMFF044I17+ CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
____________________________________________________________
consensus CTGCGTGCCTGCTTGTTACAGTGAATGGATTGTAAATATAGTTTCAAGTATGGGTTATTA
. : . : . : . : . : . :
JMFF044I17- TGCGGT
rJMSF021K09+ TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
rJMSF012B06+ TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
JMFN008E17- TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
JMFS026H01- TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
rJMFF044I17+ TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
____________________________________________________________
consensus TGCGGTTGACCAGACCAGATCAGACCAAGTTTAAGACTGTTTTAGGCTGTACTGCTCTTT
. : . : . : . : . : . :
rJMSF021K09+ AACTTTTTANGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
rJMSF012B06+ AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
JMFN008E17- AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
JMFS026H01- AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
rJMFF044I17+ AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
____________________________________________________________
consensus AACTTTTTATGGTTGTCCCTCCCCTCCCATGCAAATGTTTTGGAAGACATTATTTGTTGT
. : . : . : . : . : . :
rJMSF021K09+ ATGGATGGGGAGGGGGAGTATGTGACTCCAC
rJMSF012B06+ ATGGATGGGGAGGGGGAGTATGTGACTCCACT
JMFN008E17- ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
JMFS026H01- ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
rJMFF044I17+ ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
____________________________________________________________
consensus ATGGATGGGGAGGGGGAGTATGTGACTCCACTTAACTTGCTGTCGGAGTGTGGTTTATTT
. : . : . : . : . : . :
JMFN008E17- TAAGGACTTGGTTCTACC
JMFS026H01- TAAGGACTTGGTTCTACCTAA
rJMFF044I17+ TAAGGACTTGGTTCTACCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TAAGGACTTGGTTCTACCTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG