| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009F03 | Sequence | 536 | 011170 (8) | ref|XP_004247143.1| | 6e-24 | PREDICTED: protein PALE CRESS, chloroplastic [Solanum lycopersicum] | 692 | 011170 (8) | ref|XP_010652128.1| | 9e-73 | PREDICTED: protein PALE CRESS, chloroplastic isoform X2 [Vitis vinifera] |
| JMFF025I17 | Sequence | 549 | 011170 (8) | ref|XP_009598488.1| | 5e-28 | PREDICTED: protein PALE CRESS, chloroplastic isoform X2 [Nicotiana tomentosifor | 761 | 011170 (8) | ref|XP_010652128.1| | 8e-99 | PREDICTED: protein PALE CRESS, chloroplastic isoform X2 [Vitis vinifera] |
| JMFF044C22 | Sequence | 631 | 011170 (8) | ref|XP_004247143.1| | 1e-42 | PREDICTED: protein PALE CRESS, chloroplastic [Solanum lycopersicum] | 629 | 011170 (8) | ref|XP_011079813.1| | 2e-69 | PREDICTED: protein PALE CRESS, chloroplastic isoform X3 [Sesamum indicum] |
| JMFN009M13 | Sequence | 623 | 011170 (8) | ref|XP_010652128.1| | 3e-87 | PREDICTED: protein PALE CRESS, chloroplastic isoform X2 [Vitis vinifera] | |||||
| JMSF011P04 | Sequence | 127 | 011170 (8) | ||||||||
This contig is upended
. : . : . : . : . : . :
JMFF025I17- GTGTTGTACCCCAGAAA
JMFF009F03- A
JMFF044C22- TGTTGTACCCCAGAAA
____________________________________________________________
consensus GTGTTGTACCCCAGAAA
. : . : . : . : . : . :
JMFF025I17- TGGAGTCAAAGGCCCTGCGGATAACATGCCTTCTTCCTCTTCTTCCCACACCCCGCTACC
JMFF009F03- TGGAGTCAAAGGCCCTGCGGATAACATGCCTTCTTCCTCTTCTTCCCACACCCCGCTACC
JMFF044C22- TGGAGTCAAAGGCCCTGCGGATAACATGCCTTCTTCCTCTTCTTCCCACACCCCGCTACC
____________________________________________________________
consensus TGGAGTCAAAGGCCCTGCGGATAACATGCCTTCTTCCTCTTCTTCCCACACCCCGCTACC
. : . : . : . : . : . :
JMFF025I17- CGCCTCCGTCCTTAAAACTTTCGCTATCATTTTTTAACTCAATTCCTCTAAGAATCAAGT
JMFF009F03- CGCCTCCGTCCTTAAAACTTTCGCTATCATTTTTTAACTCAATTCCTCTAAGAATCAAGT
JMFF044C22- CGCCTCCGTCCTTAAAACTTTCGCTATCATTTTTTAACTCAATTCCTCTAAGAATCAAGT
____________________________________________________________
consensus CGCCTCCGTCCTTAAAACTTTCGCTATCATTTTTTAACTCAATTCCTCTAAGAATCAAGT
. : . : . : . : . : . :
JMFF025I17- CTCTCCCCGTCGCAGCTCCGAAAAGATGCAAGACAACCCAAGAACAAGACCTTTATGATG
JMFF009F03- CTCTCCCCGTCGCAGCTCCGAAAAGATGCAAGACAACCCAAGAACAAGACCTTTATGATG
JMFF044C22- CTCTCCCCGTCGCAGCTCCGAAAAGATGCAAGACAACCCAAGAACAAGACCTTTATGATG
____________________________________________________________
consensus CTCTCCCCGTCGCAGCTCCGAAAAGATGCAAGACAACCCAAGAACAAGACCTTTATGATG
. : . : . : . : . : . :
JMFF025I17- GGATTCCCCCAGAGTTCTTTGATGATGATGATGGCGATGGGCTTCCCCCGGAGTTCTATG
JMFF009F03- GGATTCCCCCAGAGTTCTTTGATGATGATGATGGCGATGGGCTTCCCCCGGAGTTCTATG
JMFF044C22- GGATTCCCCCAGAGTTCTTTGATGATGATGATGGCGATGGGCTTCCCCCGGAGTTCTATG
____________________________________________________________
consensus GGATTCCCCCAGAGTTCTTTGATGATGATGATGGCGATGGGCTTCCCCCGGAGTTCTATG
. : . : . : . : . : . :
JMFF025I17- ATGATGAATGGCAAGCCAAGCAAAGGGAGAAGACCAAAGAGTTTCACAGATTGCGTNGAC
JMFF009F03- ATGATGAATGGCAAGCCAAGCAAAGGGAGAAGACCAAAGAGTTTCACAGATTGCGTCAAC
JMFF044C22- ATGATGAATGGCAAGCCAAGCAAAGGGAGAAGACCAAAGAGTTTCACAGATTGCGTCAAC
____________________________________________________________
consensus ATGATGAATGGCAAGCCAAGCAAAGGGAGAAGACCAAAGAGTTTCACAGATTGCGTCAAC
. : . : . : . : . : . :
JMFF025I17- AGGAAGATGAAGAGGAGGAAAAGAAGGTTGATGAGTATCGGGAAATCGCTATGCGGTTGA
JMFF009F03- AGGAAGATGAAGAGGAGGAAAAGAAGGTTGATGAGTATCGGGAAATCGCTATGCGGTTGA
JMFF044C22- AGGAAGATGAAGAGGAGGAAAAGAAGGTTGATGAGTATCGGGAAATCGCTATGCGGTTGA
____________________________________________________________
consensus AGGAAGATGAAGAGGAGGAAAAGAAGGTTGATGAGTATCGGGAAATCGCTATGCGGTTGA
. : . : . : . : . : . :
JMFF025I17- AAGATTATCCTATAGAAGAGCTTTGCAAGGCCAGGAAATTGGTATCTAGCTTTATTAGAT
JMFF009F03- AAGATTATCCTATAGAAGAGCTTTGCAAGGCCAGGAAATTGGTATCTAGCTTTATTAGAT
JMFF044C22- AAGATTATCCTATAGAAGAGCTTTGCAAGGCCAGGAAATTGGTATCTAGCTTTATTAGAT
rJMFF025I17+ CCAGGAAATTGGTATCTAGCTTTATTAGAT
____________________________________________________________
consensus AAGATTATCCTATAGAAGAGCTTTGCAAGGCCAGGAAATTGGTATCTAGCTTTATTAGAT
. : . : . : . : . : . :
JMFF025I17- CAGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCTGAAAAAGGTGAACTAACTGAAC
JMFF009F03- CAGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCTGAAAAAGGTGAACTAACTGAAC
JMFF044C22- CAGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCTGGAAAAGGTGAACTAACTGAAC
rJMFF025I17+ CAGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCTGAAAAAGGTGAACTAACTGAAC
rJMFF009F03+ GAAAAAGGTGAACTAACTGAAC
____________________________________________________________
consensus CAGCTGAAGAAGTTGAAGAGAAAATTGAGGAAGCTGCTGAAAAAGGTGAACTAACTGAAC
. : . : . : . : . : . :
JMFF025I17- TTGTCCTGATGGTAATATGGAATCGCCTCGATCTCGCCAAGCGTGATGATGA
JMFF009F03- TTGTCCTGATGGTAATATGGAATCGCCTCGATCTCGCCAAGCGTGATGATG
JMFF044C22- TTGTCCTGATGGTAATATGGAATCGCCTCGATCTCGCCAAGCGTGATGATGAGAAGGATG
rJMFF025I17+ TTGTCCTGATGGTAATATGGAATCGCCTCGATCTCGCCAAGCGTGATGATGAGAAGGATG
rJMFF009F03+ TTGTCCTGATGGTAATATGGAATCGCCTCGATCTCGCCAAGCGTGATGATGAGAAGGATG
JMFN009M13- GGAATCGCCTCGATCTCGCCAAGCGTGATGATGAGAAGGATG
____________________________________________________________
consensus TTGTCCTGATGGTAATATGGAATCGCCTCGATCTCGCCAAGCGTGATGATGAGAAGGATG
. : . : . : . : . : . :
JMFF044C22- CAGTTCGAAGTCTTGATCTCTTATATAGGCGGGTTGAGATGGAAATTTTGAAACGTGAGG
rJMFF025I17+ CAGTTCGAAGTCTTGATCTCTTATATAGGCGGGTTGAGATGGAAATTTTGAAACGTGAGG
rJMFF009F03+ CAGTTCGAAGTCTTGATCTCTTATATAGGCGGGTTGAGATGGAAATTTTGAAACGTGAGG
JMFN009M13- CAGTTCGAAGTCTTGATCTCTTATATAGGCGGGTTGAGATGGAAATTTTGAAACGTGAGG
rJMFF044C22+ GGGTTGAGATGGAAATTNTGAAACGTGAGG
____________________________________________________________
consensus CAGTTCGAAGTCTTGATCTCTTATATAGGCGGGTTGAGATGGAAATTTTGAAACGTGAGG
. : . : . : . : . : . :
JMFF044C22- CTACTCCGGCCATGA
rJMFF025I17+ CTACTCCGGCCATGAGACTGCTCAATGATCTTCTGAATATGTATGATGGATTCGACGATG
rJMFF009F03+ CTACTCCGGCCATGAGACTGCTCAATGATCTTCTGAATATGTATGATGGATTCGACGATG
JMFN009M13- CTACTCCGGCCATGAGACTGCTCAATGATCTTCTGAATATGTATGATGGATTCGACGATG
rJMFF044C22+ CTACTCCGGCCATGAGACTGCTCAATGATCTTCTGAATATGTATGATGGATTCGACGATG
____________________________________________________________
consensus CTACTCCGGCCATGAGACTGCTCAATGATCTTCTGAATATGTATGATGGATTCGACGATG
. : . : . : . : . : . :
rJMFF025I17+ AAGGGTGGCTCAAGAAATGTAAAAAAACTATGGTCGAAACATTTCCACGGGAGGATCCAT
rJMFF009F03+ AAGGGTGGCTCAAGAAATGTAAAAAAACTATGGTCGAAACATTTCCACGGGAGGATCCAT
JMFN009M13- AAGGGTGGCTCAAGAAATGTAAAAAAACTATGGTCGAAACATTTCCACGGGAGGATCCAT
rJMFF044C22+ AAGGGTGGCTCAAGAAATGTAAAAAAACTATGGTCGAAACATTTCCACGGGAGGATCCAT
____________________________________________________________
consensus AAGGGTGGCTCAAGAAATGTAAAAAAACTATGGTCGAAACATTTCCACGGGAGGATCCAT
. : . : . : . : . : . :
rJMFF025I17+ TCAGTATTCTTGTACCCGCAGGATTTGACATGGAGAAGCACGAAGGCCCAGTGAGACCAA
rJMFF009F03+ TCAGTATTCTTGTACCCGCAGGATTTGACATGGAGAAGCACGAAGG-CCAGTGAGACCAA
JMFN009M13- TCAGTATTCTTGTACCCGCAGGATTTGACATGGAGAAGCACGAAGGCCCAGTGAGACCAA
rJMFF044C22+ TCAGTATTCTTGTACCCGCAGGATTTGACATGGAGAAGCACGAAGGCCCAGTGAGACCAA
____________________________________________________________
consensus TCAGTATTCTTGTACCCGCAGGATTTGACATGGAGAAGCACGAAGGCCCAGTGAGACCAA
. : . : . : . : . : . :
rJMFF025I17+ ATCTAGAAGCCGACGATGTACTTCTAAGAGTGGATTTCGTGAGAGAGGTAGATGCGCTGC
rJMFF009F03+ ATCTAGAAGCCGACGATGTACTTCTAAGAGTGGATTTCGTGAGAGAGGTAGATGCGCTGC
JMFN009M13- ATCTAGAAGCCGACGATGTACTTCTAAGAGTGGATTTCGTGAGAGAGGTAGATGCGCTGC
rJMFF044C22+ ATCTAGAAGCCGACGATGTACTTCTAAGAGTGGATTTCGTGAGAGAGGTAGATGCGCTGC
____________________________________________________________
consensus ATCTAGAAGCCGACGATGTACTTCTAAGAGTGGATTTCGTGAGAGAGGTAGATGCGCTGC
. : . : . : . : . : . :
rJMFF025I17+ TACAGGAGGTTCGAGGGGAAGAAATAGAAGCGGTAAATGCGCAATGGCTTGATGCTGAAT
rJMFF009F03+ TACAGGAGGTTCGAGGGGAAGAAATAGAAGCGGTAAATGCGCAATGGCTTGATGCTGAAT
JMFN009M13- TACAGGAGGTTCGAGGGGAAGAAATAGAAGCGGTAAATGCGCAATGGCTTGATGCTGAAT
rJMFF044C22+ TACAGGAGGTTCGAGGGGAAGAAATAGAAGCGGTAAATGCGCAATGGCTTGATGCTGAAT
____________________________________________________________
consensus TACAGGAGGTTCGAGGGGAAGAAATAGAAGCGGTAAATGCGCAATGGCTTGATGCTGAAT
. : . : . : . : . : . :
rJMFF025I17+ CGGTTGCGGTTAGGTTGAAGAAACAGGAGAAGCAAAGAGCCATTAACCAAGTGGAAGCTA
rJMFF009F03+ CGGTTGCGGTTAGGTTGAAGAAACAGGAGAAGCAAAGAGCCATTAACCAAGTGGAAGCTA
JMFN009M13- CGGTTGCGGTTAGGTTGAAGAAACAGGAGAAGCAAAGAGCCATTAACCAAGTGGAAGCTA
rJMFF044C22+ CGGTTGCGGTTAGGTTGAAGAAACAGGAGAAGCAAAGAGCCATTAACCAAGTGGAAGCTA
____________________________________________________________
consensus CGGTTGCGGTTAGGTTGAAGAAACAGGAGAAGCAAAGAGCCATTAACCAAGTGGAAGCTA
. : . : . : . : . : . :
rJMFF025I17+ TTTTAGATGTGGCCATTAATTTGAAGTGGTAGTGAATCAGAAGAAACCACAACCTGCCTT
rJMFF009F03+ TTTTAGATGTGGCCATTAATTTGAAGTGGTAGTGAATCAGAAGAAACCACAACCTGCCTT
JMFN009M13- TTTTAGATGTGGCCATTAATTTGAAGTGGTAGTGAATCAGAAGAAACCACAACCTGCCTT
rJMFF044C22+ TTTTAGATGTGGCCATTAATTTGAAGTGGTAGTGAATCAGAAGAAACCACAACCTGCCTT
____________________________________________________________
consensus TTTTAGATGTGGCCATTAATTTGAAGTGGTAGTGAATCAGAAGAAACCACAACCTGCCTT
. : . : . : . : . : . :
rJMFF025I17+ CTTCCCCTCCATGCTTAGGCTGCTGCATGTATCTCTCCATGCTTA-GGCTGCTGCATGTA
rJMFF009F03+ CTTCCCCTCCATGCTTAGGCTGCTGCATGTATCTCTCCATGCTTA-GGCTGCTGCATGTA
rJMSF011P04+ TCCATGCTTAGGCTGCCGCATGTATCTCTCCATGCTTATGGCTGCTGCANGTA
JMFN009M13- CTTCCCCTCCATGCTTAGGCTGCTGCATGTATCTCTCCATGCTTA-GGCTGCTGCATGTA
rJMFF044C22+ CTTCCCCTCCATGCTTAGGCTGCTGCATGTATCTCTCCATGCTTA-GGCTGCTGCATGTA
____________________________________________________________
consensus CTTCCCCTCCATGCTTAGGCTGCTGCATGTATCTCTCCATGCTTA-GGCTGCTGCATGTA
. : . : . : . : . : . :
rJMFF025I17+ TCTCTTCAAGGCTTGAAATGAAT
rJMFF009F03+ TCTCTTCAAGGCTTGAAATGAAT
rJMSF011P04+ TCTCTTCAAGGCTTGAAATGAAT
JMFN009M13- TCTCTTCAAGGCTTGAAATGAATGTAACACAATCAACGACAT
rJMFF044C22+ TCTCTTCAAGGCTTGAAATGAATGTAACACAATCAACGACATCTTAATCTTAATCTGTGT
____________________________________________________________
consensus TCTCTTCAAGGCTTGAAATGAATGTAACACAATCAACGACATCTTAATCTTAATCTGTGT
. : . : . : . : . : . :
rJMFF044C22+ ATATTGAAAGGGATGTTTAGAAAAAAAAAAAAAAAATCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus ATATTGAAAGGGATGTTTAGAAAAAAAAAAAAAAAATCTCCAGGGTGATCCGCCATAAGG