Contig 011168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007O09Sequence324000245 (4)278011168 (2)
JMFF044B14Sequence649000245 (4)ref|XP_011038615.1|2e-30PREDICTED: uncharacterized protein At4g22758-like [Populus euphratica]646011168 (2)emb|CDP00803.1|2e-15unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF044B14+                        TATATAAAATAGGAATGTATAAGCCTCACTATATGCCTTTCTGGGA
                      ____________________________________________________________
consensus                           TATATAAAATAGGAATGTATAAGCCTCACTATATGCCTTTCTGGGA
 
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rJMFF044B14+          CGGCCCCGATTTGGGCGACTCGGGTGCCTAGGCCGCTTAGTCGGCCCAGAAGGGTAAAAT
                      ____________________________________________________________
consensus             CGGCCCCGATTTGGGCGACTCGGGTGCCTAGGCCGCTTAGTCGGCCCAGAAGGGTAAAAT
 
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rJMFF044B14+          TGTCTGGGTCGATTTTTACAACACTGTTTCTGTATTTTGTTTTATGCATATCTATTGATA
                      ____________________________________________________________
consensus             TGTCTGGGTCGATTTTTACAACACTGTTTCTGTATTTTGTTTTATGCATATCTATTGATA
 
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rJMFF044B14+          ACATTGTTGTGAAATTTGTAGCTCTTAGTCCATGGGACACAATTGGATCACTGGGGGTTC
                      ____________________________________________________________
consensus             ACATTGTTGTGAAATTTGTAGCTCTTAGTCCATGGGACACAATTGGATCACTGGGGGTTC
 
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rJMFF044B14+          GAAACTTTGTGCTGTGCAAGAAGCCGGCGGAGGAGAAAGCAACTTCCGGCGATGGGAAAC
                      ____________________________________________________________
consensus             GAAACTTTGTGCTGTGCAAGAAGCCGGCGGAGGAGAAAGCAACTTCCGGCGATGGGAAAC
 
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rJMFF007O09+                  GAGGCGGTGGCGGCTCNGAAGTCGGGCAGCATNTGGAAGACATTGTTCAACA
rJMFF044B14+          AGGCGGCCGAGGCGGTGGCGGCTCGGAAGTCGGGCAGCATCTGGAAGACATTGTTCAACA
                      ____________________________________________________________
consensus             AGGCGGCCGAGGCGGTGGCGGCTCGGAAGTCGGGCAGCATCTGGAAGACATTGTTCAACA
 
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rJMFF007O09+          AGTCACNGAATGCCAAGGTTATGTNTCATNGAGGTGGTGGGATGGTTCACTCAAAATCCC
rJMFF044B14+          AGTCACTGAATGCCAAGGTTATGTCTCATTGAGGTGGTGGGATGGTTCACTCAAAATCCC
                      ____________________________________________________________
consensus             AGTCACTGAATGCCAAGGTTATGTCTCATTGAGGTGGTGGGATGGTTCACTCAAAATCCC
 
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rJMFF007O09+          AAGATTATGTCTCATNGGAGTGAAGTGCAATAAAACATTCTGTTAGGCAGTTACTGATTG
rJMFF044B14+          AAGATTATGTCTCATTGGAGTGAAGTGCAATAAAACATTCTGTTAGGCAGTTACTGATTG
                      ____________________________________________________________
consensus             AAGATTATGTCTCATTGGAGTGAAGTGCAATAAAACATTCTGTTAGGCAGTTACTGATTG
 
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rJMFF007O09+          TCTTAGGTTGTCTCTTGGATTTGTTGTTTTTGAGGTTTTTGCAATTAGCTTTAATTTGAT
rJMFF044B14+          TCTTAGGTTGTCTCTTGGATTTGTTGTTTTTGAGGTTTTTGCAATTAGCTTTAATTTGAT
                      ____________________________________________________________
consensus             TCTTAGGTTGTCTCTTGGATTTGTTGTTTTTGAGGTTTTTGCAATTAGCTTTAATTTGAT
 
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rJMFF007O09+          TTGATCTGATTTANGATTCAGAACTAGTAT                              
rJMFF044B14+          TTGATCTGATTTATGATTCAGAACTAGTATCAATGTATTGTTGTTACCATTCTATTGTTA
                      ____________________________________________________________
consensus             TTGATCTGATTTATGATTCAGAACTAGTATCAATGTATTGTTGTTACCATTCTATTGTTA
 
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rJMFF044B14+          TTGTTCAATAAAAGCTTAAAGTTTTAGACCTTAAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TTGTTCAATAAAAGCTTAAAGTTTTAGACCTTAAAAAAAAAAAAAAAAACTCTCCAGGGT