Contig 011164:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014B21Sequence499011164 (5)
JMFF043K17Sequence647000423 (7)ref|XP_007035550.1|2e-110Cullin 1 isoform 2 [Theobroma cacao] gb|EOY06476.1| Cullin 1 isoform 2 [Theobrom612011164 (5)
JMFS023F04Sequence480011164 (5)emb|CAC87837.1|6e-32cullin 1C [Nicotiana tabacum]
JMFS150H06Sequence594011164 (5)emb|CAC87837.1|9e-31cullin 1C [Nicotiana tabacum]
JMSF023K03Sequence695022117ref|XP_009369139.1|8e-109PREDICTED: cullin-1-like [Pyrus x bretschneideri]749011164 (5)emb|CAC87837.1|2e-36cullin 1C [Nicotiana tabacum]

Alignment

This contig is upended


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JMFS150H06-                                           AATAGTGCGTATTATGAAGAGTAGGAAA
JMFS023F04-                                           AATAGTGCGTATTATGAAGAGTAGGAAA
rJMSF023K03+                 ATAGAAGATATGCTATTGATGCTTCAATAGTGCGTATTATGAAGAGTAGGAAA
                      ____________________________________________________________
consensus                    ATAGAAGATATGCTATTGATGCTTCAATAGTGCGTATTATGAAGAGTAGGAAA
 
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JMFS150H06-           GTCTTGGGCTATCAGCAGTTAGTCATGGAATGTGTTGAGCAGTTGGGACGCATGTTCAAG
JMFS023F04-           GTCTTGGGCTATCAGCAGTTAGTCATGGAATGTGTTGAGCAGTTGGGACGCATGTTCAAG
rJMSF023K03+          GTCTTGGGCTATCAGCAGTTAGTCATGGAATGTGTTGAGCAGTTGGGACGCATGTTCAAG
                      ____________________________________________________________
consensus             GTCTTGGGCTATCAGCAGTTAGTCATGGAATGTGTTGAGCAGTTGGGACGCATGTTCAAG
 
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JMFS150H06-           CCTGATGTCAAAGTGATCAAGAAGAGGATTGAAGATTTAATTACTAGGGACTACCTTGAG
JMFS023F04-           CCTGATGTCAAAGCGATCAAGAAGAGGATTGAAGATTTAATTACTAGGGACTACCTTGAG
rJMSF023K03+          CCTGATGTCAAAGCGATCAAGAAGAGGATTGAAGATTTAATTACTAGGGACTACCTTGAG
                      ____________________________________________________________
consensus             CCTGATGTCAAAGCGATCAAGAAGAGGATTGAAGATTTAATTACTAGGGACTACCTTGAG
 
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JMFS150H06-           AGGGACAAGGATAATCCCAACATGTTTAAATACTTGGCATAATTGGGTCCAGATACTTGG
JMFS023F04-           AGGGACAAGGATAATCCCAACATGTTTAAATACTTGGCATAATTGGGTCCAGATACTTGG
rJMSF023K03+          AGGGACAAGGATAATCCCAACATGTTTAAATACTTGGCATAATTGGGTCCAGATACTTGG
rJMFF043K17+                                                         TCCAGATACTTGG
                      ____________________________________________________________
consensus             AGGGACAAGGATAATCCCAACATGTTTAAATACTTGGCATAATTGGGTCCAGATACTTGG
 
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JMFS150H06-           TCGAGAAAGTTGATGATTTTGTCTGCTGCTATATCAGCACAGGAGAGGATAAAACCGTCC
JMFS023F04-           TCGAGAAAGTTGATGATTTTGTCTGCTGCTATATCAGCACAGGAGAGGATAAAACCGTCC
rJMSF023K03+          TCGAGAAAGTTGATGATTTTGTCTGCTGCTATATCAGCACAGGAGAGGATAAAACCGTCC
rJMFF014B21+                                       TATATCAGCACAGGAGAGGATAAAGCCGTCC
rJMFF043K17+          TCGAGAAAGTTGATGATTTNGTCTGCTGCTATATCAGCACAGGAGAGGATAAAACCGTCC
                      ____________________________________________________________
consensus             TCGAGAAAGTTGATGATTTTGTCTGCTGCTATATCAGCACAGGAGAGGATAAAACCGTCC
 
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JMFS150H06-           ATTAAAGTTTGCAAACAAGCACAGCTCCTGTGAAGGAACTCTCGTGATTTTGGTAACCCA
JMFS023F04-           ATTAAAGTTTGCAAACAAGCACAGCTCCTGTGAAGGAACTCTCGTGATTTTGGTAACCCA
rJMSF023K03+          ATTAAAGTTTGCAAACAAGCACAGCTCCTGTGAAGGAACTCTCGTGATTTTGGTAACCCA
rJMFF014B21+          ATTAAAGTTTGCAANCAAGCACAGCTCCTGTGAAGGAACTCTCGTGATTTTGGTAACCCA
rJMFF043K17+          ATTAAAGTTTGCAAACAAGCACAGCTCCTGTGAAGGAACTCTCGTGATTTTGGTAACCCA
                      ____________________________________________________________
consensus             ATTAAAGTTTGCAAACAAGCACAGCTCCTGTGAAGGAACTCTCGTGATTTTGGTAACCCA
 
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JMFS150H06-           TTGATTTCAAAATTACCTGTACATTTGAGCACCAAAAAGTTGGGTAACTTATATGCATCC
JMFS023F04-           TTGATTTCAAAATTACCTGTACATTTGAGCACCAAAAAGTTGGGTAACTTATATGCATCC
rJMSF023K03+          TTGATTTCAAAATTACCTGTACATTTGAGCACCAAAAAGTTGGGTAACTTATATGCATCC
rJMFF014B21+          TTGATTTCAAANTTACCTGTACATTTGAGCNCCAAAAAGTTGGGTAANTTATATGCATCC
rJMFF043K17+          TTGATTTCAAAATTACCTGTACATTTGAGCACCAAAAAGTTGGGTAACTTATATGCATCC
                      ____________________________________________________________
consensus             TTGATTTCAAAATTACCTGTACATTTGAGCACCAAAAAGTTGGGTAACTTATATGCATCC
 
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JMFS150H06-           TGAAGAGGTTGTGATTGTTTCCACTCTTCGACTTCTCCCTATATGGCCACCTCCCTCGTA
JMFS023F04-           TGAAGAGGTTGTGATTGTTTCCACTCTTCGACTTCTCCCTATATGGCCACCTCCCTCGTA
rJMSF023K03+          TGAAGAGGTTGTGATTGTTTCCACTCTTCGACTTCTCCCTATATGGCCACCTCCCTCGTA
rJMFF014B21+          TGAAGAGGTNGTGATTGTTTCCACTCTTCGACTTCTCCCTATATGGCCACCTCCNTNGTA
rJMFF043K17+          TGAAGAGGTTGTGATTGTTTCCACTCTTCGACTTCTCCCTATATGGCCACCTCCCTCGTA
                      ____________________________________________________________
consensus             TGAAGAGGTTGTGATTGTTTCCACTCTTCGACTTCTCCCTATATGGCCACCTCCCTCGTA
 
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JMFS150H06-           CACATTTCATTCCACGTTTGCAACTCAACTAACTAGCATTCGATATAATGATATTCAGCA
JMFS023F04-           CACATTTCATTCCACGTTTGCAA                                     
rJMSF023K03+          CACATTTCATTCCACGTTTGCAACTCAACTAACTAGCATTCGATATAATGATATTCAGCA
rJMFF014B21+          CACATTTCATTCCACGTTTGCAACTCAACTAACTAGCATTCGATATAATGATATTCAGCA
rJMFF043K17+          CACATTTCATTCCACGTTTGCAACTCAACTAACTAGCATTCGATATAATGATATTCAGCA
                      ____________________________________________________________
consensus             CACATTTCATTCCACGTTTGCAACTCAACTAACTAGCATTCGATATAATGATATTCAGCA
 
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JMFS150H06-           ACCGAACTACCTATCTCTGTTTCCTGATTGGTTTCCAGCTTCACTTTCTTGATTGCT   
rJMSF023K03+          ACCGAACTACCTATCTCTGTTTCCTGATTGGTTTCCAGCTTCACTTTCTTGATTGCTGTA
rJMFF014B21+          ACCGNACTACCTATCTCTGTTTCGTGATTGGTTTCCAGCTTCACTTTCTTGATTGCTGTA
rJMFF043K17+          ACCGAACTACCTATCTCTGTTTCCTGATTGGTTTCCAGCTTCACTTTCTTGATTGCTGTA
                      ____________________________________________________________
consensus             ACCGAACTACCTATCTCTGTTTCCTGATTGGTTTCCAGCTTCACTTTCTTGATTGCTGTA
 
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rJMSF023K03+          ATGGTTTGGCTTTCATTGAGCTGAGTTATCCACTCTGCCGCTTTTTCAAACAAAATGCAG
rJMFF014B21+          ATGGTTTGGCTTTCATTGAGCTGAGTTATCCNNTNTGCCGNTTTTTCAAACAAAATGCAG
rJMFF043K17+          ATGGTTTGGCTTTCATTGAGCTGAGTTATCCACTCTGCCGCTTTTTCAAACAAAATGCAG
                      ____________________________________________________________
consensus             ATGGTTTGGCTTTCATTGAGCTGAGTTATCCACTCTGCCGCTTTTTCAAACAAAATGCAG
 
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rJMSF023K03+          TGTAACTTTTCAGCTGTGGAGTGATCATTATCCAACTGTCGTTTGTATAGATAATTTGTT
rJMFF014B21+          TGTAACTTTTCAGCTGTGGAGTGATCATTATCCAACTGTCGTTTGTATAGATAATTTGTT
rJMFF043K17+          TGTAACTTTTCAGCTGTGGAGTGATCATTATCCAACTGTCGTTTGTATAGATAATTTGTT
                      ____________________________________________________________
consensus             TGTAACTTTTCAGCTGTGGAGTGATCATTATCCAACTGTCGTTTGTATAGATAATTTGTT
 
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rJMSF023K03+          AACAATGAAC                                                  
rJMFF014B21+          AACAATGAACAAGTTTTAATTTCTCATGTATTTTGTAACTTTATGAAT            
rJMFF043K17+          AACAATGAACAAGTTTTAATTTCTC-TGTATTTTGTAACTTTATGAATATGGATATTGTA
                      ____________________________________________________________
consensus             AACAATGAACAAGTTTTAATTTCTCATGTATTTTGTAACTTTATGAATATGGATATTGTA
 
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rJMFF043K17+          TGGTTTTTATCTTCTTTGTACATTAGCCATTCGCAGTAATTCTACTATCCTATTTTACCC
                      ____________________________________________________________
consensus             TGGTTTTTATCTTCTTTGTACATTAGCCATTCGCAGTAATTCTACTATCCTATTTTACCC