Contig 011163:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035L02Sequence572007318 (4)dbj|BAO57291.1|6e-65zinc finger CCCH domain-containing protein [Ipomoea nil]766011163 (3)dbj|BAO57291.1|1e-90zinc finger CCCH domain-containing protein [Ipomoea nil]
JMFF043J07Sequence637007318 (4)dbj|BAO57291.1|5e-89zinc finger CCCH domain-containing protein [Ipomoea nil]612011163 (3)dbj|BAO57291.1|3e-18zinc finger CCCH domain-containing protein [Ipomoea nil]
JMSF049J22Sequence694017958dbj|BAO57291.1|2e-54zinc finger CCCH domain-containing protein [Ipomoea nil]715011163 (3)dbj|BAO57291.1|8e-41zinc finger CCCH domain-containing protein [Ipomoea nil]

Alignment

This contig is upended


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rJMFF035L02+                                              ACTATAAGAGTATGGAGCCTTGAA
                      ____________________________________________________________
consensus                                                 ACTATAAGAGTATGGAGCCTTGAA
 
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rJMFF035L02+          ACTTTGCAGTGCCTACAGATTTTGACCGATCACACCAGCGTTGTGATGTCGTTTCTTTGT
                      ____________________________________________________________
consensus             ACTTTGCAGTGCCTACAGATTTTGACCGATCACACCAGCGTTGTGATGTCGTTTCTTTGT
 
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rJMFF035L02+          TGGGACCAATTTCTTTTATCATGTTCTTTGGACAAAACAGTAAAAGTCTGGGTTGCTAAC
                      ____________________________________________________________
consensus             TGGGACCAATTTCTTTTATCATGTTCTTTGGACAAAACAGTAAAAGTCTGGGTTGCTAAC
 
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rJMFF035L02+          GAGAGCGGGAACTTGGAAGTGACGTACACCCACCAGGAAGAACATGGAGTGCTAGCCCTG
rJMSF049J22+                                                       GGAGTGCTAGCCCTG
                      ____________________________________________________________
consensus             GAGAGCGGGAACTTGGAAGTGACGTACACCCACCAGGAAGAACATGGAGTGCTAGCCCTG
 
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rJMFF035L02+          TGTGGAATGCATGATGCAGAGGCCAAGCCGGTACTGCTTTGCTCTTGCAATGACAATACA
rJMSF049J22+          TGTGGAATGCATGATGCAGAGGCCAAGCCGGTACTGCTTTGCTCTTGCAATGACAATACA
rJMFF043J07+                                                         CAATGACAATACA
                      ____________________________________________________________
consensus             TGTGGAATGCATGATGCAGAGGCCAAGCCGGTACTGCTTTGCTCTTGCAATGACAATACA
 
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rJMFF035L02+          GTTCGTGTGTATGATCTTCCATCCTTTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
rJMSF049J22+          GTTCGTGTGTATGATCTTCCATCCTTTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
rJMFF043J07+          GTTCGTGTGTATGATCTTCCATCC-TTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
                      ____________________________________________________________
consensus             GTTCGTGTGTATGATCTTCCATCCTTTTCTGAGAGGGGGAAGATCTTCTCCAAAGAGGCA
 
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rJMFF035L02+          ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAGGTCAA
rJMSF049J22+          ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAAGTCAA
rJMFF043J07+          ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAGGTCAA
                      ____________________________________________________________
consensus             ATACGTTGCATAGAGATTGGCCCTGGTGGTTTGTTTTTCACGGGTGACGAATCAGGTCAA
 
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rJMFF035L02+          GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
rJMSF049J22+          GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
rJMFF043J07+          GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
                      ____________________________________________________________
consensus             GTACGAGTGTGGAAGTGGTTGGCTGAAACGACTACAGCAGCAGCATAAGGGGCAACTAAA
 
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rJMFF035L02+          TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
rJMSF049J22+          TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
rJMFF043J07+          TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
                      ____________________________________________________________
consensus             TTCATTTACCGTAACGTATTTCTATTGTTATGGTCTGTATATTTTCCCCCTTCACTCATT
 
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rJMFF035L02+          TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
rJMSF049J22+          TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
rJMFF043J07+          TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
                      ____________________________________________________________
consensus             TATGAGCTCATGAAGAAGGCATAAGATAAGGAATAGCAGTTTTGATCTGTTAGCGATGGC
 
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rJMFF035L02+          AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
rJMSF049J22+          AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
rJMFF043J07+          AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
                      ____________________________________________________________
consensus             AGTCGTTAGCTTGTTTTGTGTAGGCGGCTCCTTCTCCTTGTACCTGTTCCGAGGAAAGGT
 
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rJMFF035L02+          TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
rJMSF049J22+          TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
rJMFF043J07+          TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
                      ____________________________________________________________
consensus             TGGGGAGTATAAGAGTGTATTTCTCCTGTTCTTTCCTTAAATCTAGAAATAATATGGTAT
 
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rJMFF035L02+          TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
rJMSF049J22+          TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
rJMFF043J07+          TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
                      ____________________________________________________________
consensus             TCTTGTAATTTTCGAATGAGGCTCTTATTAATGTCTCTGATATACGACCCCAGATTACAT
 
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rJMFF035L02+          TTCCTGAATTATTT                                              
rJMSF049J22+          TTCCTGAATTATTTTGATATTGAGGATGT                               
rJMFF043J07+          TTCCTGAATTATTTTGATATTGAGGATGTTGTAACTCTTCATTTCATTGCTTAAGAGCTT
                      ____________________________________________________________
consensus             TTCCTGAATTATTTTGATATTGAGGATGTTGTAACTCTTCATTTCATTGCTTAAGAGCTT
 
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rJMFF043J07+          TCTCTGCTCCCTGTGGCTGTGATTAGTGATAGTGCAAGTGAAATTCCTGTTTTCTACTCT
                      ____________________________________________________________
consensus             TCTCTGCTCCCTGTGGCTGTGATTAGTGATAGTGCAAGTGAAATTCCTGTTTTCTACTCT