| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004A20 | Sequence | 560 | 008857 (6) | ref|XP_010102357.1| | 4e-47 | ZmSiR protein [Morus notabilis] gb|EXB93318.1| ZmSiR protein [Morus notabilis] | 738 | 011160 (5) | ref|XP_009603091.1| | 3e-71 | PREDICTED: sulfite reductase 1 [ferredoxin], chloroplastic [Nicotiana tomentosi |
| JMFF038F02 | Sequence | 513 | 008857 (6) | ref|XP_010102357.1| | 2e-26 | ZmSiR protein [Morus notabilis] gb|EXB93318.1| ZmSiR protein [Morus notabilis] | 761 | 011160 (5) | ref|XP_009603091.1| | 2e-66 | PREDICTED: sulfite reductase 1 [ferredoxin], chloroplastic [Nicotiana tomentosi |
| JMFF043C08 | Sequence | 646 | 008857 (6) | ref|XP_007015074.1| | 2e-57 | Ferredoxin:sulfite reductase isoform 2 [Theobroma cacao] ref|XP_007015075.1| Fer | 631 | 011160 (5) | gb|AGT40330.1| | 2e-28 | sulfite reductase [Nicotiana attenuata] |
| JMSF024M18 | Sequence | 661 | 008857 (6) | ref|XP_009603091.1| | 1e-67 | PREDICTED: sulfite reductase 1 [ferredoxin], chloroplastic [Nicotiana tomentosi | 772 | 011160 (5) | ref|XP_009603091.1| | 4e-82 | PREDICTED: sulfite reductase 1 [ferredoxin], chloroplastic [Nicotiana tomentosi |
| JMSF030P19 | Sequence | 616 | 008857 (6) | ref|XP_009603091.1| | 4e-69 | PREDICTED: sulfite reductase 1 [ferredoxin], chloroplastic [Nicotiana tomentosi | 722 | 011160 (5) | gb|ACN23794.1| | 2e-61 | sulfite reductase [Nicotiana benthamiana] gb|ACN82434.1| sulfite reductase [Nico |
This contig is upended
. : . : . : . : . : . :
rJMSF024M18+ TTCCCCTGTGCCCTCTTGCAATA
____________________________________________________________
consensus TTCCCCTGTGCCCTCTTGCAATA
. : . : . : . : . : . :
rJMSF030P19+ CCTGACANTCTTAAGCGGGTTCGAGCAATGTTTGAGAAG
rJMSF024M18+ ACTGAAGCTGAACGTGGAATTCCTGACATTCTTAAGCGGGTTCGAGCAATGTTTGAGAAG
rJMFF004A20+ CCTGACATTCTTAAGCGGGTTCGAGCAATGTTTGAGAAG
rJMFF038F02+ CTTAAGCGGGTTCGAGCAATGTTTGAGAAG
____________________________________________________________
consensus ACTGAAGCTGAACGTGGAATTCCTGACATTCTTAAGCGGGTTCGAGCAATGTTTGAGAAG
. : . : . : . : . : . :
rJMSF030P19+ GTTGGCCCTTGAGAGTGAAGAATCTATAGTGGTAAGGGTAACTGGCTGCCCTAATGGCTG
rJMSF024M18+ GTTGG-CCTTGAGAGTGAAGAATCTATAGTGGTAAGGGTAACTGGCTGCCCTAATGGCTG
rJMFF004A20+ GTTGG-CCTTGAGAGTGAAGAATCTATAGTGGTAAGGGTAACTGGCTGCCCTAATGGCTG
rJMFF038F02+ GTTGN-CCTTGAGAGTGAAGAATCTATAGTGGTAAGGGTAACTGGCTGCCCTAATGGCTG
____________________________________________________________
consensus GTTGG-CCTTGAGAGTGAAGAATCTATAGTGGTAAGGGTAACTGGCTGCCCTAATGGCTG
. : . : . : . : . : . :
rJMSF030P19+ TGCTAGACCATACATGGCTGAACTTGGCTTGGTTGGTGATGGTCCTAACAGTTATCAGAT
rJMSF024M18+ TGCTAGACCATACATGGCTGAACTTGGCTTGGTTGGTGATGGTCCTAACAGTTATCAGAT
rJMFF004A20+ TGCTAGACCATACATGGCTGAACTTGGCTTGGTTGGTGATGGTCCTAACAGTTATCAGAT
rJMFF038F02+ TGCTAGACCATACATGGCTGAACTTGGCTTGGTTGGTGATGGTCNTAACAGTTATCAGAT
____________________________________________________________
consensus TGCTAGACCATACATGGCTGAACTTGGCTTGGTTGGTGATGGTCCTAACAGTTATCAGAT
. : . : . : . : . : . :
rJMSF030P19+ TTGGCTTGGTGGAACAACCAATCAGACTTCATTGGCAAAGCCTTTCAAGGATAAGGCTAA
rJMSF024M18+ TTGGCTTGGTGGAACAACCAATCAGACTTCATTGGCAAAGCCTTTCAAGGATAAGGCTAA
rJMFF004A20+ TTGGCTTGGTGGAACAACCAATCAGACTTCATTGGCAAAGCCTTTCAAGGATAAGGCTAA
rJMFF038F02+ TTGGCTTGGTGGAACAACCAATCAGACTTCATTGGCAAAGCCTTTCAAGGATAAGGCTAA
rJMFF043C08+ TCATTGGCAAAGCCTTTCAAGGATAAGGCTAA
____________________________________________________________
consensus TTGGCTTGGTGGAACAACCAATCAGACTTCATTGGCAAAGCCTTTCAAGGATAAGGCTAA
. : . : . : . : . : . :
rJMSF030P19+ GATTCAAGATCTTGAGAAAGTTTTGGAGCCTTTGTTCTATCATTGGAAACAGAATCGGCA
rJMSF024M18+ GATTCAAGATCTTGAGAAAGTTTTGGAGCCTTTGTTCTATCATTGGAAACAGAATCGGCA
rJMFF004A20+ GATTCAAGATCTTGAGAAAGTTTTGGAGCCTTTGTTCTATCATTGGAAACAGAATCGGCA
rJMFF038F02+ GATTCAAGATCTTGAGAAAGTTTTGGAGCCTTTGTTCTATCATTGGAAACAGAATCGGCA
rJMFF043C08+ GATTCAAGATCTTGAGAAAGTTTTGGAGCCTTTGTTCTATCATTGGAAACAGAATCGGCA
____________________________________________________________
consensus GATTCAAGATCTTGAGAAAGTTTTGGAGCCTTTGTTCTATCATTGGAAACAGAATCGGCA
. : . : . : . : . : . :
rJMSF030P19+ AGCAAGTGAATCATTTGGTGACTTCACAACCCGCATGGGATTTGAAAAACTAAACGAGTT
rJMSF024M18+ AGCAAGTGAATCATTTGGTGACTTCACAACCCGCATGGGATTTGAAAAACTAAACGAGTT
rJMFF004A20+ AGCAAGTGAATCATTTGGTGACTTCACAACCCGCATGGGATTTGAAAAACTAAACGAGTT
rJMFF038F02+ AGCAAGTGAATCATTTGGTGACTTCACAACCCGCATGGGATTTGAAAAACTAAACGAGTT
rJMFF043C08+ AGCAAGTGAATCATTTGGTGACTTCACAACCCGCATGGGATTTGAAAAACTAAACGAGTT
____________________________________________________________
consensus AGCAAGTGAATCATTTGGTGACTTCACAACCCGCATGGGATTTGAAAAACTAAACGAGTT
. : . : . : . : . : . :
rJMSF030P19+ GATTAACAAATGGGAAGGAAGCCTACCTGAGTCCTCATCTTGATATGATGCGAACCTCGA
rJMSF024M18+ GATTAACAAATGGGAAGGAAGCCTACCTGAGTCCTCATCTTGATATGATGCGAACCTCGA
rJMFF004A20+ GATTAACAAATGGGAAGGAAGCCTACCTGAGTCCTCATCTTGATATGATGCGAACCTCGA
rJMFF038F02+ GATTAACAAATGGGAAGGAAGCCTACCTGAGTCCTCATCTTGATATGATGCGAACCTCGA
rJMFF043C08+ GATTAACAAATGGGAAGGAAGCCTACCTGAGTCCTCATCTTGATATGATGCGAACCTCGA
____________________________________________________________
consensus GATTAACAAATGGGAAGGAAGCCTACCTGAGTCCTCATCTTGATATGATGCGAACCTCGA
. : . : . : . : . : . :
rJMSF030P19+ TTCTGACAAAGAGACCTGCGAAGAAGCTATGGATGTACGAACTTGCTAGATTTTTCAAGA
rJMSF024M18+ TTCTGACAAAGAGACCTGCGAAGAAGCTATGGATGTACGAACTTGCTAGATTTTTCAAGA
rJMFF004A20+ TTCTGACAAAGAGACATGCGAAGAAGCTATGGATGTACGAACTTGCTAGATTTTTCAAGA
rJMFF038F02+ TTCTGACAAAGAGACCTGCGAAGAAGCTATGGATGTACGAACTTGCTAGATTTTTCAAGA
rJMFF043C08+ TTCTGACAAAGAGACCTGCGAAGAAGCTATGGATGTACGAACTTGCTAGATTTTTCAAGA
____________________________________________________________
consensus TTCTGACAAAGAGACCTGCGAAGAAGCTATGGATGTACGAACTTGCTAGATTTTTCAAGA
. : . : . : . : . : . :
rJMSF030P19+ TAAGAGCTCCCATCATCAAATGCTGGCAAGTTAAGTTATTCTCAGCAAAATATGCGAGAG
rJMSF024M18+ TAAGAGCTCCCATCATCAAATGCTGGCAAGTTAAGTTATTCTCAGCAAAATATGCGAGAG
rJMFF004A20+ TAAGAGCTCCCATCATCAAATGCTGGCAAGTTAAGTTATTCTCAGCAAAATATGCGAGAG
rJMFF038F02+ TAAGAGCTCCCATCATCAAATGCTGGCAAGTTAAGTTATTCTCAGCAAAATATGCGAGAG
rJMFF043C08+ TAAGAGCTCCCATCATCAAATGCTGGCAAGTTAAGTTATTCTCAGCAAAATATGCGAGAG
____________________________________________________________
consensus TAAGAGCTCCCATCATCAAATGCTGGCAAGTTAAGTTATTCTCAGCAAAATATGCGAGAG
. : . : . : . : . : . :
rJMSF030P19+ CCTGAGCAAATAAATAGACTGCTGACTTTGTTGTCAGCTCTCTCAATGTAGAGTCTTGGC
rJMSF024M18+ CCTGAGCAAATAAATAGACTGCTGACTTTGTTGTCAGCTCTCTCAATGTAGAGTCTTGGC
rJMFF004A20+ CCTGAGCAAATAAATAGACTGCTGACTTTGTTGTCAGCTCTCTCAATGTAGAGTCTTGGC
rJMFF038F02+ CCTGAGCAAATAAATAGACTGCTGACTTTGTTGTCAGCTCTCTCAATGTAGAGTCTTGGC
rJMFF043C08+ CCTGAGCAAATAAATAGACTGCTGACTTTGTTGTCAGCTCTCTCAATGTAGAGTCTTGGC
____________________________________________________________
consensus CCTGAGCAAATAAATAGACTGCTGACTTTGTTGTCAGCTCTCTCAATGTAGAGTCTTGGC
. : . : . : . : . : . :
rJMSF030P19+ CTACATTATCTAACAAACCATGCAAGTACGCAGAACCTGCACTCACTTCTTCCATTCGTG
rJMSF024M18+ CTACATTATCTAACAAACCATGCAAGTACGCAGAACCTGCACTCACTTCTTCCATTCGTG
rJMFF004A20+ CTACATTATCTAACAAACCATGCAAGTACGCAGAACCTGCACTCACTTCTTCCATTCGTG
rJMFF038F02+ CTACATTATCTAACAAACCATGCAAGTACGCAGAACCTGCACTCACTTCTTCCATTCGTG
rJMFF043C08+ CTACATTATCTAACAAACCATGCAAGTACGCAGAACCTGCACTCACTTCTTCCATTCGTG
____________________________________________________________
consensus CTACATTATCTAACAAACCATGCAAGTACGCAGAACCTGCACTCACTTCTTCCATTCGTG
. : . : . : . : . : . :
rJMSF030P19+ TTTTTTTTCATTATGCTTTCTTTCTGTTTTGTGTGTGTGTGTGTGTGTGTTTTATATAGT
rJMSF024M18+ -TTTTTTTCATTATGCTTTCTTTCTGTTTTGTGTGTGTGTGTGTGTGTGTTTTATATAGT
rJMFF004A20+ -TTTTTTTCATTATGCTTTCTTTCTGTTTTGTGTGTGTGTGTGTGTGTGTTTTATATAGT
rJMFF038F02+ -TTTTTTTCATTATGCTTTCTTTCTGTTTTGTGTGTGTGTGTGTGTGTGTTTTATATAGT
rJMFF043C08+ -TTTTTTTCATTATGCTTTCTTTCTGTTTTGTGTGTGTGTGTGTGTGTGTTTTATATAGT
____________________________________________________________
consensus -TTTTTTTCATTATGCTTTCTTTCTGTTTTGTGTGTGTGTGTGTGTGTGTTTTATATAGT
. : . : . : . : . : . :
rJMSF030P19+ GACTGCATTACTGCTGCTCT
rJMSF024M18+ GACTGCATTACTGCTGCTCTT
rJMFF004A20+ GACTGCATTACTGCTGCTCTTTAGCTTGAATGGAATACATA
rJMFF038F02+ GACTGCATTACTGCTGCTCTTTAGCTTGAATGGAATACATAATTTATCTGGATTTTGCTC
rJMFF043C08+ GACTGCATTACTGCTGCTCTTTAGCTTGAATGGAATACATAATTTATCTGGATTTTGCTC
____________________________________________________________
consensus GACTGCATTACTGCTGCTCTTTAGCTTGAATGGAATACATAATTTATCTGGATTTTGCTC
. : . : . : . : . : . :
rJMFF038F02+ AATAAAAGGTCTT
rJMFF043C08+ AATAAAAGGTCTTTTCGTTATCTTCCTTTCTCCAAAAAAAAAAAAAAAACACTCCAGGGT
____________________________________________________________
consensus AATAAAAGGTCTTTTCGTTATCTTCCTTTCTCCAAAAAAAAAAAAAAAACACTCCAGGGT