Contig 011159:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043B05Sequence647003263 (3)emb|CAN79024.1|1e-70hypothetical protein VITISV_022895 [Vitis vinifera]647011159 (4)ref|XP_009613096.1|2e-40PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana tomentosifo
JMFS032D11Sequence593011159 (4)ref|XP_009762524.1|1e-60PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana sylvestris]
JMFS110H09Sequence613011159 (4)ref|XP_009762524.1|5e-41PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana sylvestris]
JMSF043D04Sequence644011159 (4)ref|XP_009762524.1|3e-47PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS032D11-                                                       GGGCTGCAGGTGATGA
                      ____________________________________________________________
consensus                                                         GGGCTGCAGGTGATGA
 
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JMFS032D11-           TCATTATGATGTTAAAATGCCATGCCACCTCATCCTATCAAAACTTGCAGAGAAGTGCCC
rJMSF043D04+                                    ACCTCATCCTATCANAACTTGCAGAGAAGTGCCC
                      ____________________________________________________________
consensus             TCATTATGATGTTAAAATGCCATGCCACCTCATCCTATCAAAACTTGCAGAGAAGTGCCC
 
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JMFS032D11-           GTCTGCTGTCTTAGCAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATTT
rJMSF043D04+          GTCTGCTGTNTTAGCAGTGTTAGATTCTTNGGTGGNTCCTCTCCAGAAAACTATAAATTT
JMFS110H09+                         CAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATTT
rJMFF043B05+                        CAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATNT
                      ____________________________________________________________
consensus             GTCTGCTGTCTTAGCAGTGTTAGATTCTTTGGTGGATCCTCTCCAGAAAACTATAAATTT
 
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JMFS032D11-           TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
rJMSF043D04+          TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAANGAAGACATGATTCGGAG
JMFS110H09+           TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
rJMFF043B05+          TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
                      ____________________________________________________________
consensus             TAGACCCAAACAAGATGCTGTCAAGCAAGAGGTAGACCGCAATGAAGACATGATTCGGAG
 
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JMFS032D11-           TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
rJMSF043D04+          TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
JMFS110H09+           TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
rJMFF043B05+          TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
                      ____________________________________________________________
consensus             TGCCCTCCGAGCGATTGCATCCTTGAATCGTATCAGCGGAGGGGATTACAGCCACAAGTT
 
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JMFS032D11-           CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
rJMSF043D04+          CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
JMFS110H09+           CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
rJMFF043B05+          CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
                      ____________________________________________________________
consensus             CAAGAACCTCATGAATGAAATTGCAAAGTCCCAAACACTATGGGATAAGTACTGTTCAAT
 
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JMFS032D11-           CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
rJMSF043D04+          CAAGAATGAGTGNTTTTAAAGCCNTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
JMFS110H09+           CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
rJMFF043B05+          CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
                      ____________________________________________________________
consensus             CAAGAATGAGTGATTTTAAAGCCTTTTTTTTGGTGTTGCGGAGGAATGCAGGGAGGGATT
 
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JMFS032D11-           AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
rJMSF043D04+          AAATGTGCTTTGGTTGTGAATCNTATCATACGGAAGAAGGCAATTATAGGTNGACAGCAG
JMFS110H09+           AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
rJMFF043B05+          AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
                      ____________________________________________________________
consensus             AAATGTGCTTTGGTTGTGAATCATATCATATGGAAGAAGGCAATTATAGGTTGACAGCAG
 
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JMFS032D11-           AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
rJMSF043D04+          AGGAGGGCNTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTNAAATCTTAGGACTCG
JMFS110H09+           AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
rJMFF043B05+          AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
                      ____________________________________________________________
consensus             AGGAGGGCTTGTGTTGTGTTGCACATAAAACCGACAAGGGAGTTTAAATCTTAGGACTCG
 
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JMFS032D11-           GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
rJMSF043D04+          GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
JMFS110H09+           GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
rJMFF043B05+          GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
                      ____________________________________________________________
consensus             GGGAGTTGAGACATTGGAATATAGTTTATTTTGTAGGTGATTGTACCTATGATTGTCGTA
 
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JMFS032D11-           CTTACGGGGTTGCATTTCTTCTAGCGGTATGGAT                          
rJMSF043D04+          CNTACGGGGTTGCATTTCTTCTAGCGGTATGGATNTTGTAATTGGCAGCAAGCATCCGTG
JMFS110H09+           CTTACGGGGTTGCATTTCTTCTAGCGGTATGGATTTTGTAATTGGCAGCAAGCATCCGTG
rJMFF043B05+          CTTACGGGGTTGCATTTCTTCTAGCGGTATGGATTTTGTAATTGGCAGCAAGCATCCGTG
                      ____________________________________________________________
consensus             CTTACGGGGTTGCATTTCTTCTAGCGGTATGGATTTTGTAATTGGCAGCAAGCATCCGTG
 
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rJMSF043D04+          TTTGTTCATCANTGGTGCTNAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAA 
JMFS110H09+           TTTGTTCATCAATGGTGCTTAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAA 
rJMFF043B05+          TTTGTTCATCAATGGTGCTTAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAAC
                      ____________________________________________________________
consensus             TTTGTTCATCAATGGTGCTTAATTATGTTAAGTGGATGATGTTTGATTTTTCTGTCAAAC
 
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rJMFF043B05+          TTTCAAAATTTGTCXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TTTCAAAATTTGTCNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG