| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009D14 | Sequence | 586 | 007308 (2) | 689 | 011154 (5) | ref|XP_006385630.1| | 3e-95 | hypothetical protein POPTR_0003s08810g, partial [Populus trichocarpa] gb|ERP6342 | |||
| JMFF012P01 | Sequence | 491 | 007308 (2) | 751 | 011154 (5) | ref|XP_009592603.1| | 2e-109 | PREDICTED: protein ABCI7, chloroplastic [Nicotiana tomentosiformis] | |||
| JMFF042I24 | Sequence | 630 | 019560 | ref|XP_004244542.1| | 1e-06 | PREDICTED: protein ABCI7, chloroplastic [Solanum lycopersicum] | 584 | 011154 (5) | ref|XP_006385630.1| | 4e-86 | hypothetical protein POPTR_0003s08810g, partial [Populus trichocarpa] gb|ERP6342 |
| JMFN031N20 | Sequence | 614 | 011154 (5) | ref|XP_009592603.1| | 3e-105 | PREDICTED: protein ABCI7, chloroplastic [Nicotiana tomentosiformis] | |||||
| JMSF046F17 | Sequence | 608 | 015850 | 763 | 011154 (5) | ref|XP_009802601.1| | 3e-109 | PREDICTED: protein ABCI7, chloroplastic [Nicotiana sylvestris] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF046F17+ TTATGTCAAGA
____________________________________________________________
consensus TTATGTCAAGA
. : . : . : . : . : . :
rJMSF046F17+ TTAAATGATACTCCTTACATTCAACACTCTTTCCTCTATTTGTGTATTGTTTTGACTTCC
____________________________________________________________
consensus TTAAATGATACTCCTTACATTCAACACTCTTTCCTCTATTTGTGTATTGTTTTGACTTCC
. : . : . : . : . : . :
JMFN031N20- CAGGAATCTAGTAGTATCTACAAGCTCATAGAGG
rJMSF046F17+ ACACAAATTAACTGAAGTTTTATTTGCAGGAATCTAGTAGTATCTACAAGCTCATAGAGA
rJMFF012P01+ CAGGAATCTAGTAGTATCTACAAGCTCATAGAGA
rJMFF009D14+ CAGGAATNTAGTAGTATNTACAAGCTCATAGAGA
____________________________________________________________
consensus ACACAAATTAACTGAAGTTTTATTTGCAGGAATCTAGTAGTATCTACAAGCTCATAGAGA
. : . : . : . : . : . :
JMFN031N20- TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGTAGGCCCCGACA
rJMSF046F17+ TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
rJMFF012P01+ TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
rJMFF009D14+ TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
____________________________________________________________
consensus TCAGCACTGGTGGAAAATTGAGCAGGCATAATATTCATATACAGCAAGCAGGCCCCGACA
. : . : . : . : . : . :
JMFN031N20- CCGTCACTGAATTATCTACTTTTCATTTGTCTGTTACTGATCAAACACAAGATCTACACA
rJMSF046F17+ CCGTCACTGAATTATCTACTTTTCATTTGTCTGTCACTGATCAAACACAAGATCTACACA
rJMFF012P01+ CCGTCACTGAATTATCTACTTTTCATTTGTCTGTCACTGATCAAACACAAGATCTACACA
rJMFF009D14+ CCGTCACTGAATTATCTACTTTTCATTTGTCTGTCACTGATCAAACACAAGATCTACACA
rJMFF042I24+ CTACTTTTCATTTGTCTGTTACTGATCAAACACAAGATCTACACA
____________________________________________________________
consensus CCGTCACTGAATTATCTACTTTTCATTTGTCTGTTACTGATCAAACACAAGATCTACACA
. : . : . : . : . : . :
JMFN031N20- GTAAATTAGTGTTGGACCATCCACGGGGTTATTCTCAGCAACTACACAAGTGCATTGTGG
rJMSF046F17+ GTAAATTAGTGTTGGACCATCCACGGGGATATTCTCAGCAACTACACAAGTGCATTGTGG
rJMFF012P01+ GTAAATTAGTGTTGGACCATCCACGGGGATATTCTCAGCAACTACACAAGTGCATTGTGG
rJMFF009D14+ GTAAATTAGTGTTGGACCATCCACGGGGATATTCTCAGCAACTACACAAGTGCATTGTGG
rJMFF042I24+ GTAAATTAGTGTTGGACCATCCACGGGGTTATTCTCAGCAACTACACAAGTGCATTGTGG
____________________________________________________________
consensus GTAAATTAGTGTTGGACCATCCACGGGGTTATTCTCAGCAACTACACAAGTGCATTGTGG
. : . : . : . : . : . :
JMFN031N20- CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAGC
rJMSF046F17+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAAC
rJMFF012P01+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGANCAGANACGCACAAC
rJMFF009D14+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAAC
rJMFF042I24+ CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAGC
____________________________________________________________
consensus CTCATTCATCAGGGCAGGCTGTTTTTGATGGGAATGTTCAGGTGAACAGAAACGCACAGC
. : . : . : . : . : . :
JMFN031N20- AAACGGACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAACTGTGAACG
rJMSF046F17+ AAACGAACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAAGTGTGAACG
rJMFF012P01+ AAACGAACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAANTGTGAACG
rJMFF009D14+ AAACGAACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAAGTGTGAACG
rJMFF042I24+ AAACGGACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAACTGTGAACG
____________________________________________________________
consensus AAACGGACGCAGGGCAACTTACACGGAGCCTCCTCTTGGAGCCCCGAGCAACTGTGAACG
. : . : . : . : . : . :
JMFN031N20- TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMSF046F17+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMFF012P01+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMFF009D14+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
rJMFF042I24+ TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
____________________________________________________________
consensus TGAAGCCTAACCTGCAAATTATTGCTGATGATGTTAAGTGCTCCCATGGAGCTGCAATCA
. : . : . : . : . : . :
JMFN031N20- GCGACTTGGAAGAAGACCAGCTGTTTTACTTACAGGCACGGGGTATCGACATAAAAGCTG
rJMSF046F17+ GCGACTTGGAAGAGGACCAGCTCTTTTACTTACAGGCACGGGGTATTGACATAAAAACTG
rJMFF012P01+ GCGACTTGGAAGAGGACCAGCTCTTTTACTTACAGGCACGGGGTATTGACATAAAAACTG
rJMFF009D14+ GCGACTTGGAAGAGGACCAGCTCTTTTACTTACAGGCACGGGGTATTGACATAAAAACTG
rJMFF042I24+ GCGACTTGGAAGAAGACCAGCTGTTTTACTTACAGGCACGGGGTATCGACATAAAAGCTG
____________________________________________________________
consensus GCGACTTGGAAGAGGACCAGCTGTTTTACTTACAGGCACGGGGTATTGACATAAAAGCTG
. : . : . : . : . : . :
JMFN031N20- CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMSF046F17+ CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMFF012P01+ CAAGAAAAGCTCTGGTTTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMFF009D14+ CAAGAAAAGCTCTGGTTTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
rJMFF042I24+ CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
____________________________________________________________
consensus CAAGAAAAGCTCTGG-TTTTTTCCTTTGCAGCCGAGGTGGTTTCCCGTCTCCCAGATGAT
. : . : . : . : . : . :
JMFN031N20- TCCATACG
rJMSF046F17+ TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
rJMFF012P01+ TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
rJMFF009D14+ TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
rJMFF042I24+ TCCATACGAAAGAAAGTTGAAGATCAAATTAGAACACTGCTCGAATCCATCAATCCCAAA
____________________________________________________________
consensus TCCATACGAAAGAAAGTTGAGGATCAAATTAGAACACTGCTCGAATCCACCAATCCCAAA
. : . : . : . : . : . :
rJMSF046F17+ CCGTGAGTCTTCATAAATTATTTTGTA
rJMFF012P01+ CCGTGAGTCTTCATAAATTATTTTGTA
rJMFF009D14+ CCGTGAGTCTTCATAAATTATTTTGTA
rJMFF042I24+ CTGTGACTCTTCGTAAATTATTTTGTAGATGTTGTTTATGATTCATTGTATGCTAGAAAA
____________________________________________________________
consensus CCGTGAGTCTTCATAAATTATTTTGTAGATGTTGTTTATGATTCATTGTATGCTAGAAAA
. : . : . : . : . : . :
rJMFF042I24+ TTAGAGAAATTGAACGATATGATGATTGTTCAGTCTCGCTTAATTAATTATATTGTTCTT
____________________________________________________________
consensus TTAGAGAAATTGAACGATATGATGATTGTTCAGTCTCGCTTAATTAATTATATTGTTCTT