Contig 011151:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K13Sequence542003257 (2)ref|XP_011078811.1|3e-108PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Sesamum indicu733011151 (2)ref|XP_010312071.1|9e-35PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Solanum lycope
JMFF042C20Sequence630003257 (2)ref|XP_009628616.1|1e-130PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Nicotiana tome616011151 (2)gb|ACN27128.1|1e-07unknown [Zea mays]

Alignment

This contig is upended


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rJMFF005K13+                               TGGTAAGTGCTTACACTTCCTTTGCTAGAATGGAGACTG
                      ____________________________________________________________
consensus                                  TGGTAAGTGCTTACACTTCCTTTGCTAGAATGGAGACTG
 
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rJMFF005K13+          GTCTTGGGAGTGAGCGCCACAAGAGGAGGATGGATCCTATTACCGAGGAGCCCCTATTTA
                      ____________________________________________________________
consensus             GTCTTGGGAGTGAGCGCCACAAGAGGAGGATGGATCCTATTACCGAGGAGCCCCTATTTA
 
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rJMFF005K13+          CAAATTGTACTAGGGACTTCATTGGTACTCATGATTATATATTCTACTCAGCGGACTCGT
rJMFF042C20+                                                      TACTCAGCGGACTCGT
                      ____________________________________________________________
consensus             CAAATTGTACTAGGGACTTCATTGGTACTCATGATTATATATTCTACTCAGCGGACTCGT
 
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rJMFF005K13+          TAACCGTTGTATCATTGTTGGAGCTCCTAGACGAGGATAGCTTGAGAAAGGACACAGCAC
rJMFF042C20+          TAACCGTTGTATCATTGTTGGAGCTCCTAGACGAGGATAGCTTGAGAAAGGACACAGCAC
                      ____________________________________________________________
consensus             TAACCGTTGTATCATTGTTGGAGCTCCTAGACGAGGATAGCTTGAGAAAGGACACAGCAC
 
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rJMFF005K13+          TTCCTTCTCCAGAGTGGTCTTCTGATCATATAGCCATGTTAGCTGAGTTTCGCTGCAAAT
rJMFF042C20+          TTCCTTCTCCAGAGTGGTCTTCTGATCATATAGCCATGTTAGCTGAGTTTCGCTGCAAAT
                      ____________________________________________________________
consensus             TTCCTTCTCCAGAGTGGTCTTCTGATCATATAGCCATGTTAGCTGAGTTTCGCTGCAAAT
 
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rJMFF005K13+          CAAAAACTAAACATTGACACGACGCCGGGTAGGCAGTGGTTTGCCTTAATTTTCCTTTTT
rJMFF042C20+          CAAAAACTAAACATTGACACGACGCCGGGTAGGCAGTGGTTTGCCTTAATTTTCCTTTTT
                      ____________________________________________________________
consensus             CAAAAACTAAACATTGACACGACGCCGGGTAGGCAGTGGTTTGCCTTAATTTTCCTTTTT
 
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rJMFF005K13+          CCCAAAGCAGAAACTGATGTTAGGAACTGAAGGAGTTAGGACATGGTTGTGAAAAATATG
rJMFF042C20+          CCCAAAGCAGAAACTGATGTTAGGAACTGAAGGAGTTAGGACATGGTTGTGAAAAATATG
                      ____________________________________________________________
consensus             CCCAAAGCAGAAACTGATGTTAGGAACTGAAGGAGTTAGGACATGGTTGTGAAAAATATG
 
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rJMFF005K13+          TTTAGTTAGTAGTTCATGTCGTCTTTATCAAGCCATAAACTGCTATTTGTCTATATGTAT
rJMFF042C20+          TTTAGTTAGTAGTTCATGTCGTCTTTATCAAGCCATAAACTGCTATTTGTCTATATGTAT
                      ____________________________________________________________
consensus             TTTAGTTAGTAGTTCATGTCGTCTTTATCAAGCCATAAACTGCTATTTGTCTATATGTAT
 
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rJMFF005K13+          TTGAATATGTTGTTTCACACTTTTACTCAAATTCTCTTGGAAGGGGAAAAGGGGTTATGA
rJMFF042C20+          TTGAATATGTTGTTTCACACTTTTACTCAAATTCTCTTGGAAGGGGAAAAGGGGTTATGA
                      ____________________________________________________________
consensus             TTGAATATGTTGTTTCACACTTTTACTCAAATTCTCTTGGAAGGGGAAAAGGGGTTATGA
 
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rJMFF005K13+          GGGAGGGCTGTTTTTAATGTTGTAATGTATTGTGCAGGTGACAGGTGTTTGGTAGAAGAT
rJMFF042C20+          GGGAGGGCTGTTTTTAATGTTGTAATGTATTGTGCAGGTGACAGGTGTTTGGTAGAAGAT
                      ____________________________________________________________
consensus             GGGAGGGCTGTTTTTAATGTTGTAATGTATTGTGCAGGTGACAGGTGTTTGGTAGAAGAT
 
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rJMFF005K13+          GAATGATTTTGGAAATAGAGGCAGAAAGAGTGATGAGGGTTAAAATGATAAAAGCCATTG
rJMFF042C20+          GAATGATTTTGGAAATAGAGGCAGAAAGAGTGATGAGGGTTAAAATGATAAAAGCCATTG
                      ____________________________________________________________
consensus             GAATGATTTTGGAAATAGAGGCAGAAAGAGTGATGAGGGTTAAAATGATAAAAGCCATTG
 
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rJMFF005K13+          TAACAATAGTAGATGATGATGGTGTGTTCTTGGTATCCATCCCCACGAGGGTTTCTTTGT
rJMFF042C20+          TAACAATAGTAGATGATGATGGTGTGTTCTTGGTATCCATCCCCACGAGGGTTTCTTTGT
                      ____________________________________________________________
consensus             TAACAATAGTAGATGATGATGGTGTGTTCTTGGTATCCATCCCCACGAGGGTTTCTTTGT
 
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rJMFF005K13+          ATTATGCTGCTGCCTTTGTCTCATAGGAAAAGAA                          
rJMFF042C20+          ATTATGCTGCTGCCTTTGTCTCATAGGAAAAGAATGATATTATAATGTTCAAAAAAAAAG
                      ____________________________________________________________
consensus             ATTATGCTGCTGCCTTTGTCTCATAGGAAAAGAATGATATTATAATGTTCAAAAAAAAAG