Contig 011149:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042B11Sequence467011149 (4)ref|XP_006850848.1|8e-10hypothetical protein AMTR_s00025p00137570 [Amborella trichopoda] gb|ERN12429.1| 314011149 (4)
JMFF042F11Sequence522011149 (4)ref|XP_008246527.1|96.7PREDICTED: uncharacterized protein LOC103344688 [Prunus mume]522011149 (4)ref|XP_008246527.1|96.7PREDICTED: uncharacterized protein LOC103344688 [Prunus mume]

Alignment

This contig is upended


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JMFF042F11-                TGCAGCATACGAACGCCCTAATTACAGGTGCGAAGAGAGCATCTTTGCACTACCA
JMFF042B11-                                                          CTTTGCACTACCA
rJMFF042F11+               TGCAGCATACGAACGCCCTAATTACAGGTGCGAAGAGAGCATCTTTGCACTACCA
                      ____________________________________________________________
consensus                  TGCAGCATACGAACGCCCTAATTACAGGTGCGAAGAGAGCATCTTTGCACTACCA
 
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JMFF042F11-           ACGAGAAGCGGAGAAATGCAACACGGGGATGGAAACGTGCGAAGAAGCTAGAGAAAGGGC
JMFF042B11-           ACGAGAAGCGGAGAAATGC-ACACGGGGATGGAAACGTGCGAAGAAGCTAGAGAACGGGC
rJMFF042F11+          ACGAGAAGCGGAGAAATGCAACACGGGGATGGAAACGTGCGAAGAAGCTAGAGAAAGGGC
                      ____________________________________________________________
consensus             ACGAGAAGCGGAGAAATGCAACACGGGGATGGAAACGTGCGAAGAAGCTAGAGAAAGGGC
 
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JMFF042F11-           TCAAGCGGCATTAATAGTAGAGCGCAAGCTCTCCGAACTGTGGGAGAGTCGGGCCAGGGA
JMFF042B11-           TCAAGCGGCATTAATAGTAGAGCGCAAGCTCTCCGAACTGTGGGAGAGTCGGGCCAGGGA
rJMFF042F11+          TCAAGCGGCATTAATAGTAGAGCGCAAGCTCTCCGAACTGTGGGAGAGTCGGGCCAGGGA
                      ____________________________________________________________
consensus             TCAAGCGGCATTAATAGTAGAGCGCAAGCTCTCCGAACTGTGGGAGAGTCGGGCCAGGGA
 
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JMFF042F11-           TTACGGGTGGAATGATGATGAGTAAAAGAGCTTATTCAAGAAACACACTTTTAGGCATTT
JMFF042B11-           TTACGGGTGGAATGATGATGAGTAAAAGAGCTTATTCAAGAAACACACTTTTAGGCATTT
rJMFF042F11+          TTACGGGTGGAATGATGATGAGTAAAAGAGCTTATTCAAGAAACACACTTTTAGGCATTT
rJMFF042B11+                                                               GGCATTT
                      ____________________________________________________________
consensus             TTACGGGTGGAATGATGATGAGTAAAAGAGCTTATTCAAGAAACACACTTTTAGGCATTT
 
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JMFF042F11-           GAAAATTTTCCTGATAGTTTTTAGAGTTTTCATTGCACGCAAACTTAGACTTGGTAGCAG
JMFF042B11-           GAAAATTTTCCTGATAGTTTTTAGAGTTTTCATTGCACGCAAACTTAGACTTGGTATCAC
rJMFF042F11+          GAAAATTTTCCTGATAGTTTTTAGAGTTTTCATTGCACGCAAACTTAGACTTGGTAGCAG
rJMFF042B11+          GAAAATTTTCCTGATGTTTTTTAGAGTAATCATTGCAGGCAAGTTTTGACTGGGTAGCAG
                      ____________________________________________________________
consensus             GAAAATTTTCCTGATAGTTTTTAGAGTTTTCATTGCACGCAAACTTAGACTTGGTAGCAG
 
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JMFF042F11-           TAAGTAACCCATAT-CTGTGAATATAGTTTTTTTTTTTTTTGGTCAGGAGGAGCTTTCTT
JMFF042B11-           TAAGTCACCCATATCCTGTGAATATACTTTTTTTTTTTTTTGGCCACGAGGAGCTCTCTT
rJMFF042F11+          TAAGTAACCCATAT-CTGTGAATATAGTTTTTTTTTTTTTTGGTCAGGAGGAGCTTTCTT
rJMFF042B11+          TAAGTAACCCATAT-CGGTGAATATAGTTTTTGTTTTTTTTGGTCAGGAGGAGCTTTCTT
                      ____________________________________________________________
consensus             TAAGTAACCCATAT-CTGTGAATATAGTTTTTTTTTTTTTTGGTCAGGAGGAGCTTTCTT
 
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JMFF042F11-           TGTTTGTTTCATTTTAGAGTTTACATC-TCTGAAGATTCCATTGAAATGGAAAATGAACC
rJMFF042F11+          TGTTTGTTTCATTTTAGAGTTTACATC-TCTGAAGATTCCATTGAAATGGAAAATGAACC
rJMFF042B11+          TGGTTGTTTCATTTTAGAGTTTACATCTTGTGAAGATTCCATTGAAATGGAAAATGAACC
                      ____________________________________________________________
consensus             TGTTTGTTTCATTTTAGAGTTTACATC-TCTGAAGATTCCATTGAAATGGAAAATGAACC
 
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JMFF042F11-           TGAGGGGGTTCCCCTGTGTTTTTAGCATTTACTGCCAGTGGGTATTGTGAGATGCTGTTT
rJMFF042F11+          TGAGGGGGTTCCCCTGTGTTTTTAGCATTTACTGCCAGTGGGTATTGTGAGATGCTGTTT
rJMFF042B11+          TGAGGGGGTTCCCCTGTGTTTTTAGCATGTACTACCAGTGGGTATTATGAGATGCTGTAT
                      ____________________________________________________________
consensus             TGAGGGGGTTCCCCTGTGTTTTTAGCATTTACTGCCAGTGGGTATTGTGAGATGCTGTTT
 
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JMFF042F11-           TGATCAAAGTTCTCTCAGTTCCAAGAAAATTGAATGTGAATTATT               
rJMFF042F11+          TGATCAAAGTTCTCTCAGTTCCAAGAAAATTGAATGTGAATTATT               
rJMFF042B11+          TGAGCAAAGTTCTTTCAGGTCCATGAAAATTGGAGGTGAATTATTGCTCAAAAAAAAAAA
                      ____________________________________________________________
consensus             TGATCAAAGTTCTCTCAGTTCCAAGAAAATTGAATGTGAATTATTGCTCAAAAAAAAAAA