Contig 011145:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041F02Sequence654011145 (2)gb|KCW50353.1|9e-38hypothetical protein EUGRSUZ_J00118 [Eucalyptus grandis]582011145 (2)ref|XP_007011313.1|5e-38RING/U-box superfamily protein [Theobroma cacao] gb|EOY20123.1| RING/U-box super

Alignment

This contig is upended


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JMFF041F02-                                                          AATAGTATCATTA
                      ____________________________________________________________
consensus                                                            AATAGTATCATTA
 
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JMFF041F02-           CACTAACTTAAAGCTCACTCTCCATTTGAATTCTCTTTCAAGATAAAATATTTCCTAATT
                      ____________________________________________________________
consensus             CACTAACTTAAAGCTCACTCTCCATTTGAATTCTCTTTCAAGATAAAATATTTCCTAATT
 
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JMFF041F02-           GAATCTCAGTATGATTGAAGATTAGCTGAATGGAAGCGTCATTAATCGGCAACATCTTGT
                      ____________________________________________________________
consensus             GAATCTCAGTATGATTGAAGATTAGCTGAATGGAAGCGTCATTAATCGGCAACATCTTGT
 
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JMFF041F02-           AGCCCATGATGAGGATAAGGGCCAAGAATTCTTCTTCTTCTTCTTCCAGTCTCCGTTGTT
                      ____________________________________________________________
consensus             AGCCCATGATGAGGATAAGGGCCAAGAATTCTTCTTCTTCTTCTTCCAGTCTCCGTTGTT
 
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JMFF041F02-           TCAAGAATTCCGGCACCTCTCCGATCTGCAGTTTCAGGAACTGAATCAAGAAGAATGGAT
                      ____________________________________________________________
consensus             TCAAGAATTCCGGCACCTCTCCGATCTGCAGTTTCAGGAACTGAATCAAGAAGAATGGAT
 
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JMFF041F02-           TTTTATCACCGCCCCAACAGGTTATTTCTGGAGACGCGCGGAGATTCGCGGCCCGGAAAT
                      ____________________________________________________________
consensus             TTTTATCACCGCCCCAACAGGTTATTTCTGGAGACGCGCGGAGATTCGCGGCCCGGAAAT
 
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JMFF041F02-           GGAAGCAGCAGAACGCCGCACCGGAATGGCTATCCCAACGAAGCGAGCTTCGACACTAAC
                      ____________________________________________________________
consensus             GGAAGCAGCAGAACGCCGCACCGGAATGGCTATCCCAACGAAGCGAGCTTCGACACTAAC
 
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JMFF041F02-           ATGGTGATCATATTGGCGGCGCTGCTCTGTGCTCTGCTATGCGCGCTTGGGCTCAACTCG
                      ____________________________________________________________
consensus             ATGGTGATCATATTGGCGGCGCTGCTCTGTGCTCTGCTATGCGCGCTTGGGCTCAACTCG
 
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JMFF041F02-           ATTGTGAGGTGCGCTTTGCGGTTTAGCAGCCGGTTTAGTTCGGACTCGGACGGCGGCGGC
rJMFF041F02+                            CGGTTTAGCAGCCGGTTTAGTTCGGACTCGGACGGCGGCGGC
                      ____________________________________________________________
consensus             ATTGTGAGGTGCGCTTTGCGGTTTAGCAGCCGGTTTAGTTCGGACTCGGACGGCGGCGGC
 
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JMFF041F02-           GGCGGCGGGCTGAAGAAGAGCAGTTTGAAGCAGATTCCGGTGGCGGTTTACGGGTCGGGA
rJMFF041F02+          GGCGGCGGGCTNAAGAAGAGCAGTTTGAAGCAGATTCCGGTGGCGGTTTACGGGTCGGGA
                      ____________________________________________________________
consensus             GGCGGCGGGCTGAAGAAGAGCAGTTTGAAGCAGATTCCGGTGGCGGTTTACGGGTCGGGA
 
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JMFF041F02-           GTGAATATTCCGGCCACGGATTGCCCGATTTGTCTCGGNGAGTTTTTGGATGGGGAGAAG
rJMFF041F02+          GTGAATATTCCGGCCACGGATTGCCCGATTTGTCTCGGGGAGTTTTTGGATGGGGAGAAG
                      ____________________________________________________________
consensus             GTGAATATTCCGGCCACGGATTGCCCGATTTGTCTCGGGGAGTTTTTGGATGGGGAGAAG
 
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JMFF041F02-           GTTAGGGTGCTTCCTAAATGTCACCATGGGTTTCACGTGCG                   
rJMFF041F02+          GTTAGGGTGCTTCCTAAATGTCACCATGGGTTTCACGTGCGGTGTATAAATGTGTGGCTG
                      ____________________________________________________________
consensus             GTTAGGGTGCTTCCTAAATGTCACCATGGGTTTCACGTGCGGTGTATAAATGTGTGGCTG
 
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rJMFF041F02+          GCGGCGCACCCGTCGTGCCCGACGTGCCGGCAGTCGTTGATTGAACTGCCTCCCCCGTTT
                      ____________________________________________________________
consensus             GCGGCGCACCCGTCGTGCCCGACGTGCCGGCAGTCGTTGATTGAACTGCCTCCCCCGTTT
 
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rJMFF041F02+          GATTCGGCGGCGGATGTTGAGGCTGGGTAAGATTCTTAAACCGGAGCGTGTCATCTCCGA
                      ____________________________________________________________
consensus             GATTCGGCGGCGGATGTTGAGGCTGGGTAAGATTCTTAAACCGGAGCGTGTCATCTCCGA
 
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rJMFF041F02+          TGGGAGCTTAAGGAGTTCGGCGATTCATTCTGTTTAATTTTCGATCTGCCGGTTCCGCCG
                      ____________________________________________________________
consensus             TGGGAGCTTAAGGAGTTCGGCGATTCATTCTGTTTAATTTTCGATCTGCCGGTTCCGCCG
 
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rJMFF041F02+          GCGGCCAATCAAAGCGCTGCTGATTTTGTTTATTGGTTCTTGTTGAAAAGACTAGAGATA
                      ____________________________________________________________
consensus             GCGGCCAATCAAAGCGCTGCTGATTTTGTTTATTGGTTCTTGTTGAAAAGACTAGAGATA
 
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rJMFF041F02+          GAAAGGTAGGAATGCGTACTGAATTTGGCTTTTGTTTTGTTTTTTTTTTTTCCTCTCTTT
                      ____________________________________________________________
consensus             GAAAGGTAGGAATGCGTACTGAATTTGGCTTTTGTTTTGTTTTTTTTTTTTCCTCTCTTT
 
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rJMFF041F02+          TTTTGGTCATGTACTGATTGTGGTGTGTGTTTGTTGCATTAATTCTACAAATTATTCAAC
                      ____________________________________________________________
consensus             TTTTGGTCATGTACTGATTGTGGTGTGTGTTTGTTGCATTAATTCTACAAATTATTCAAC