Contig 011143:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042D02+                                                                    CA
                      ____________________________________________________________
consensus                                                                       CA
 
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rJMSF042D02+          AACATGACTGCATAGAAATGAGCTGGATAGAGTCCATCCTTTACATCGCCGGATTCCCAA
                      ____________________________________________________________
consensus             AACATGACTGCATAGAAATGAGCTGGATAGAGTCCATCCTTTACATCGCCGGATTCCCAA
 
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rJMSF042D02+          CAAACACGCCGCCGGAAGTTCTCCTGGACGGAAAACCACTCTTCAAAAACTACTTCAAAG
                      ____________________________________________________________
consensus             CAAACACGCCGCCGGAAGTTCTCCTGGACGGAAAACCACTCTTCAAAAACTACTTCAAAG
 
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rJMSF042D02+          CCAAATCCGACTTCGTCACAAAACCCATCCCACAAACCGGGCTGGAAGGCCTGTGGAAGC
                      ____________________________________________________________
consensus             CCAAATCCGACTTCGTCACAAAACCCATCCCACAAACCGGGCTGGAAGGCCTGTGGAAGC
 
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rJMSF042D02+          GCCTCCTCGCCGAGGACTCGCCGCTGACGATCTGGAACCCCTACGGCGGCATGATGGCCA
rJMFF041D04+                                                                  GCCA
                      ____________________________________________________________
consensus             GCCTCCTCGCCGAGGACTCGCCGCTGACGATCTGGAACCCCTACGGCGGCATGATGGCCA
 
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rJMSF042D02+          ACATCTCCGAATCCGCCACCCCATTCCCCCACCGGAAAGGCGTCATCTACAAGATCCAGT
rJMFF041D04+          ACATCTCCGAATCCGCCACCCCATTCCCCCACCGGAAAGGCGTCATCTACAAGATCCAGT
                      ____________________________________________________________
consensus             ACATCTCCGAATCCGCCACCCCATTCCCCCACCGGAAAGGCGTCATCTACAAGATCCAGT
 
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rJMSF042D02+          ACTTAACGCTCTGGGAAGAAATGGACGACGAGGCGGCGGCGCGTCACATCGANTGGATCA
rJMFF041D04+          ACTTAACGCTCTGGGAAGAAATGGACGACGAGGCGGCGGCGCGTCACATCGACTGGATCA
                      ____________________________________________________________
consensus             ACTTAACGCTCTGGGAAGAAATGGACGACGAGGCGGCGGCGCGTCACATCGACTGGATCA
 
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rJMSF042D02+          GAAAGCTCCACGCGTACATGACACGCTACGTTTCCAGTTCCCCCCGACAAGCGTACGTGA
rJMFF041D04+          GAAAGCTCCACGCGTACATGACACGCTACGTTTCCAGTTCCCCCCGACAAGCGTACGTGA
                      ____________________________________________________________
consensus             GAAAGCTCCACGCGTACATGACACGCTACGTTTCCAGTTCCCCCCGACAAGCGTACGTGA
 
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rJMSF042D02+          ACTACAGAGACCTCGATCTGGGCAGCAATAAGAGCGGCGACGACGCTACACTCATGCAGG
rJMFF041D04+          ACTACAGAGACCTCGATCTGGGCAGCAATAAGAGCGGCGACGACGCTACACTCATGCAGG
                      ____________________________________________________________
consensus             ACTACAGAGACCTCGATCTGGGCAGCAATAAGAGCGGCGACGACGCTACACTCATGCAGG
 
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rJMSF042D02+          CCAGCGCGTGGGGGAACATGTATTACAAAGACAACTTTAACAGGTTGGTCCAGGTGAAGA
rJMFF041D04+          CCAGCGCGTGGGGGAACATGTATTACAAAGACAACTTTAACAGGTTGGTCCAGGTGAAGA
                      ____________________________________________________________
consensus             CCAGCGCGTGGGGGAACATGTATTACAAAGACAACTTTAACAGGTTGGTCCAGGTGAAGA
 
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rJMSF042D02+          CGAAGGTCGATCCCGACAACTTTTTCCGGCATGAACAGAGCATCCCGACGCTCACGGCCG
rJMFF041D04+          CGAAGGTCGATCCCGACAACTTTTTCCGGCATGAACAGAGCATCCCGACGCTCACGGCCG
                      ____________________________________________________________
consensus             CGAAGGTCGATCCCGACAACTTTTTCCGGCATGAACAGAGCATCCCGACGCTCACGGCCG
 
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rJMSF042D02+          CCGTGATGGGCGAAAGAAAAAGAGGCAAGAGAATGATGAATTAAATTGTTACGAATTTAC
rJMFF041D04+          CCGTGATGGGCGAAAGAAAAAGAGGCAAGAGAATGATGAATTAAATTGTTACGAATTTAC
                      ____________________________________________________________
consensus             CCGTGATGGGCGAAAGAAAAAGAGGCAAGAGAATGATGAATTAAATTGTTACGAATTTAC
 
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rJMSF042D02+          GGCGATTAGTTTCTTCACTTGTAGAATATATACAAACCTCCGGCGGCCGGCCGGCATGGG
rJMFF041D04+          GGCGATTAGTTTCTTCACTTGTAGAATATATACAAACCTCCGGCGGCCGGCCGGCATGGG
                      ____________________________________________________________
consensus             GGCGATTAGTTTCTTCACTTGTAGAATATATACAAACCTCCGGCGGCCGGCCGGCATGGG
 
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rJMSF042D02+          GTATCCTGACCGGAATCTTGTAGCCAAATAACCTTGTTTTCCGAGGTTGCTTGTCATGTT
rJMFF041D04+          GTATCCTGACCGGAATCTTGTAGCCAAATAACCTTGTTTTCCGAGGTTGCTTGTCATGTT
                      ____________________________________________________________
consensus             GTATCCTGACCGGAATCTTGTAGCCAAATAACCTTGTTTTCCGAGGTTGCTTGTCATGTT
 
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rJMSF042D02+          CAAGCTGTATTCAAT                                             
rJMFF041D04+          CAAGCTGTATTCAATTCCCTCCCTTCCATACTCATGAATAAACTGTGACAAATATTATCC
                      ____________________________________________________________
consensus             CAAGCTGTATTCAATTCCCTCCCTTCCATACTCATGAATAAACTGTGACAAATATTATCC