Contig 011142:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001K15Sequence532011603 (8)ref|XP_006341470.1|3e-92PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]739011142 (9)emb|CDO98302.1|3e-96unnamed protein product [Coffea canephora]
JMFF022K01Sequence477011603 (8)ref|XP_006341470.1|7e-81PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]741011142 (9)emb|CDO98302.1|2e-102unnamed protein product [Coffea canephora]
JMFF031L18Sequence571011603 (8)ref|XP_009614005.1|7e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi723011142 (9)emb|CDO98302.1|4e-101unnamed protein product [Coffea canephora]
JMFF035J07Sequence573011603 (8)ref|XP_009614005.1|1e-102PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Nicotiana tomentosiformi599011142 (9)emb|CDO98302.1|3e-68unnamed protein product [Coffea canephora]
JMFF041A17Sequence654011603 (8)ref|XP_006341470.1|8e-122PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]567011142 (9)emb|CDO98302.1|2e-53unnamed protein product [Coffea canephora]
JMFS007A02Sequence142011142 (9)ref|XP_011082927.1|2e-13PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Sesamum indicum]
JMSF015E05Sequence527011603 (8)ref|XP_006341470.1|6e-94PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]752011142 (9)emb|CDO98302.1|1e-108unnamed protein product [Coffea canephora]
JMSF037F16Sequence626011603 (8)ref|XP_006341470.1|1e-115PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]713011142 (9)emb|CDO98302.1|5e-102unnamed protein product [Coffea canephora]
JMSF037H21Sequence679011603 (8)ref|XP_006341470.1|2e-130PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Solanum tuberosum]761011142 (9)emb|CDO98302.1|1e-101unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF015E05+                                                        ACTATTAAGAAGAA
                      ____________________________________________________________
consensus                                                           ACTATTAAGAAGAA
 
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rJMSF015E05+          CATGGTGTCAATTTCCAAGGAAAAGATAAAGGAACATCAAAGGGTTTTCACTCCATCAGT
rJMFF031L18+                                        GGAACATCAAAGGGTTTTCACTCCATCAGT
rJMSF037F16+                                      AAGGAACATCAAAGGGTTTTCACTCCATCAGT
rJMFF022K01+                                                      TTTTCACTCCATCAGT
rJMFF001K15+                                                      TTTTCACTCCATCAGT
rJMSF037H21+                GTCAATTTCCAAGGAAAAGAT-AAGGAACATCAAAGGGTTTTCACTCCATCAGT
                      ____________________________________________________________
consensus             CATGGTGTCAATTTCCAAGGAAAAGATAAAGGAACATCAAAGGGTTTTCACTCCATCAGT
 
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rJMSF015E05+          CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMFF031L18+          CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMSF037F16+          CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMFF022K01+          CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMFF001K15+          CATTGAACCATCGTTTGNTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
rJMSF037H21+          CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
                      ____________________________________________________________
consensus             CATTGAACCATCGTTTGGTATTGGGAGGATTATATACTGTCTCTATGAGCATTCTTTCTA
 
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rJMSF015E05+          TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF031L18+          TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMSF037F16+          TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
JMFS007A02-                     AGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF022K01+          TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF001K15+          TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
rJMFF035J07+                                             ACGTCTTCCGTTTCCCACCATTGGT
rJMSF037H21+          TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
                      ____________________________________________________________
consensus             TACAAGACCCAGCCGAGATGGGGATGAACAGCTCAACGTCTTCCGTTTCCCACCATTGGT
 
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rJMSF015E05+          AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF031L18+          AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMSF037F16+          AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
JMFS007A02-           AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAA     
rJMFF022K01+          AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF001K15+          AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF035J07+          AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMSF037H21+          AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
rJMFF041A17+                                           GCAAAATGCAGAATATGAGGAAGTTGC
                      ____________________________________________________________
consensus             AGCTCCTATCAAATGCACTGTGTTCCCCTTGGTGCAAAATGCAGAATATGAGGAAGTTGC
 
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rJMSF015E05+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF031L18+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMSF037F16+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF022K01+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF001K15+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF035J07+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMSF037H21+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
rJMFF041A17+          CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
                      ____________________________________________________________
consensus             CAAGCGAATTGCAAGGTCACTAACTGCTGCTGGGCTTTCATATAAAATCGACATCACAGG
 
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rJMSF015E05+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF031L18+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMSF037F16+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF022K01+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF001K15+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF035J07+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMSF037H21+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
rJMFF041A17+          CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
                      ____________________________________________________________
consensus             CACATCAATAGGGAAAAGGTATGCAAGAACTGATGAGCTCGGAGTTCCATTTGCCATTAC
 
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rJMSF015E05+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF031L18+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMSF037F16+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF022K01+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF001K15+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF035J07+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMSF037H21+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
rJMFF041A17+          TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
                      ____________________________________________________________
consensus             TGTGGATTCAACGACCTCTGTAACTGTGCGCGAGAGGGACAGCAAACAGCAAATTCGCGT
 
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rJMSF015E05+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF031L18+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMSF037F16+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF022K01+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF001K15+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF035J07+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMSF037H21+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
rJMFF041A17+          TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
                      ____________________________________________________________
consensus             TAATGTGGACGAAGTGGCATCTGTTATTAAGGAGGTGACTGAAGGTCATAGCACCTGGGC
 
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rJMSF015E05+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF031L18+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMSF037F16+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF022K01+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF001K15+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF035J07+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMSF037H21+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
rJMFF041A17+          TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
                      ____________________________________________________________
consensus             TGATGTGATGTGGAAGTATCCAACTCACTCATCTTGATCACACTCTCAGTTGTATCACAC
 
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rJMSF015E05+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF031L18+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMSF037F16+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF022K01+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF001K15+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF035J07+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMSF037H21+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
rJMFF041A17+          ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
                      ____________________________________________________________
consensus             ACCGCTACTCCTGGTCTATACAGCCCTTTTCCCTTTTACATCCAAACATGTTTTCCAGAC
 
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rJMSF015E05+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF031L18+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMSF037F16+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF022K01+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF001K15+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF035J07+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMSF037H21+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
rJMFF041A17+          TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
                      ____________________________________________________________
consensus             TTCCATTTACAATCCTTACATGTGCAATATACTAACAGCCATTGTTCTCACTTTCTGCAT
 
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rJMSF015E05+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF031L18+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMSF037F16+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF022K01+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF001K15+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF035J07+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMSF037H21+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
rJMFF041A17+          TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
                      ____________________________________________________________
consensus             TTCTGTTTTGTACCAGTCACAGATACTTTTTGTTCCTTGAAAATATTGTAATTTAGAATT
 
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rJMSF015E05+          TCAAGCTAGAAC                                                
rJMFF031L18+          TCAAGCTAGAACACACACTATCTGGTGCTGGAG                           
rJMSF037F16+          TCAAGCTAGAACACACA                                           
rJMFF022K01+          TCAAGCTAGAACACACACTATCTGGTGCTGGAG                           
rJMFF001K15+          TCAAGCTAGAACACACACTATCTGGTGCTGGAG                           
rJMFF035J07+          TCAAGCTAGAACACACACTATCTGGTGCTGGAG                           
rJMSF037H21+          TCAAGCTAGAACACACACTATCTGGTGCTGGAG                           
rJMFF041A17+          TCAAGCTAGAACACACACTATCTGGTGCTTGGAGATATTGTTGCTTTTTTCTAAGGTTAG
                      ____________________________________________________________
consensus             TCAAGCTAGAACACACACTATCTGGTGCTGGAGGATATTGTTGCTTTTTTCTAAGGTTAG