Contig 011136:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040C13Sequence551011136 (2)ref|XP_004238864.1|2e-59PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Solanum 694011136 (2)ref|XP_009772054.1|3e-61PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog isoform X

Alignment

This contig is upended


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JMFF040C13-                                                           AATTTAGGGTTC
                      ____________________________________________________________
consensus                                                             AATTTAGGGTTC
 
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JMFF040C13-           TTCCCCCGTCTGTGTTCTCTTTCCTATATTCGTATATCCCTTAAAAACGCAAATAAATCA
                      ____________________________________________________________
consensus             TTCCCCCGTCTGTGTTCTCTTTCCTATATTCGTATATCCCTTAAAAACGCAAATAAATCA
 
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JMFF040C13-           GCGACTGTTTGATTCGAGCGCTAAGTTCTCTCTCTCGACGTTGAAAATAGGTATCATTCT
                      ____________________________________________________________
consensus             GCGACTGTTTGATTCGAGCGCTAAGTTCTCTCTCTCGACGTTGAAAATAGGTATCATTCT
 
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JMFF040C13-           GATATATTTGCAATGAAGTACCTGGAATACACTCCACTTGATCGTATAAGTGAATTTTTG
                      ____________________________________________________________
consensus             GATATATTTGCAATGAAGTACCTGGAATACACTCCACTTGATCGTATAAGTGAATTTTTG
 
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JMFF040C13-           AGTCATGTGAACCTTGGAGAGCGCACGGTTAAGGGATGTCTTGAACCTTACTCTTGCAAA
                      ____________________________________________________________
consensus             AGTCATGTGAACCTTGGAGAGCGCACGGTTAAGGGATGTCTTGAACCTTACTCTTGCAAA
 
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JMFF040C13-           CATACAGGAACAGATAAGAAGCTGTCTCTCAGTTTGGAGAATGAGATTCTTGATTACCTT
                      ____________________________________________________________
consensus             CATACAGGAACAGATAAGAAGCTGTCTCTCAGTTTGGAGAATGAGATTCTTGATTACCTT
 
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JMFF040C13-           GGAAAGTCTTCTGACACAGACTCTTCTTCACAGTTGATTATCTATGTTGTAGATCCAGCC
                      ____________________________________________________________
consensus             GGAAAGTCTTCTGACACAGACTCTTCTTCACAGTTGATTATCTATGTTGTAGATCCAGCC
 
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JMFF040C13-           GAAAGACATTGATTTATCTGCTCCTTACTCTCAATCATATGTATCCAGACTATGACTTCA
rJMFF040C13+                                    ACTCTCAATCATATGTATCCAGACTATGACTTCA
                      ____________________________________________________________
consensus             GAAAGACATTGATTTATCTGCTCCTTACTCTCAATCATATGTATCCAGACTATGACTTCA
 
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JMFF040C13-           GTGCAGTGAATGCTCACCAA-TTTTTTACGGAAGAAAATTGGGATAGTTTTAAGCAGATA
rJMFF040C13+          GTGCAGTGAATGCTCACCAATTTTTTTACGGAAGAAAATTGGGATAGTTTTAAGCAGATA
                      ____________________________________________________________
consensus             GTGCAGTGAATGCTCACCAATTTTTTTACGGAAGAAAATTGGGATAGTTTTAAGCAGATA
 
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JMFF040C13-           TTCGATACCTACATGTTTGAAGCATCAAAGGAATGGCTTGAGACAAATGAGGGCAGTCCT
rJMFF040C13+          TTCGATACCTACATGTTTGAAGCATCAAAGGAATGGCTTGAGACAAATGAGGGCAGTCCT
                      ____________________________________________________________
consensus             TTCGATACCTACATGTTTGAAGCATCAAAGGAATGGCTTGAGACAAATGAGGGCAGTCCT
 
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rJMFF040C13+          CTGCTGGAGAGCTTGTACAAGGCCTTGGATGAGGTTGTTAAAGTCACAGAATGTGAAATT
                      ____________________________________________________________
consensus             CTGCTGGAGAGCTTGTACAAGGCCTTGGATGAGGTTGTTAAAGTCACAGAATGTGAAATT
 
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rJMFF040C13+          TACAGTTACAATCCGGAGGCTGATGCAGATCCGTTACATGAAAAAGGAACCTTATGGTCA
                      ____________________________________________________________
consensus             TACAGTTACAATCCGGAGGCTGATGCAGATCCGTTACATGAAAAAGGAACCTTATGGTCA
 
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rJMFF040C13+          TATCACTTCTTCTTTTACAATAGAAGGTTGAAGCGCATTGTCAGCTTCCGTTTCAGCTGT
                      ____________________________________________________________
consensus             TATCACTTCTTCTTTTACAATAGAAGGTTGAAGCGCATTGTCAGCTTCCGTTTCAGCTGT
 
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rJMFF040C13+          GTGAGCAACTTGGCTTTGGTAGATGGATTGAATCACGAGGAAGATGCAGAGATATTCGAT
                      ____________________________________________________________
consensus             GTGAGCAACTTGGCTTTGGTAGATGGATTGAATCACGAGGAAGATGCAGAGATATTCGAT
 
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rJMFF040C13+          GGCATGGACATGTGAAGCAACAGAGTGTTTAGTGCTCTGCAGTGGTGCTGTTTCAGGCCC
                      ____________________________________________________________
consensus             GGCATGGACATGTGAAGCAACAGAGTGTTTAGTGCTCTGCAGTGGTGCTGTTTCAGGCCC
 
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rJMFF040C13+          GAAACTGTGAATGTATATAATGCCATCATGAGTTATTAGGAGATCGATCGTGGTTACTAA
                      ____________________________________________________________
consensus             GAAACTGTGAATGTATATAATGCCATCATGAGTTATTAGGAGATCGATCGTGGTTACTAA
 
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rJMFF040C13+          TCAGACAACTTTCTAATCCGACATTTAACTTGTGTTAATATGTATGAAGATCACGAACAA
                      ____________________________________________________________
consensus             TCAGACAACTTTCTAATCCGACATTTAACTTGTGTTAATATGTATGAAGATCACGAACAA
 
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rJMFF040C13+          ATGGAGAGTAATAGTTGCAAATTCTCTTTGCTTTTGTATCTGCTCTCTACTAGTGTCTCG
                      ____________________________________________________________
consensus             ATGGAGAGTAATAGTTGCAAATTCTCTTTGCTTTTGTATCTGCTCTCTACTAGTGTCTCG
 
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rJMFF040C13+          TATGTCATTGAATAAAATTTGGGACCTATTATGGCATTCTTTTAATGAACACACGCTCAT
                      ____________________________________________________________
consensus             TATGTCATTGAATAAAATTTGGGACCTATTATGGCATTCTTTTAATGAACACACGCTCAT