Contig 011134:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011H23Sequence531011134 (6)emb|CDP09307.1|6e-65unnamed protein product [Coffea canephora]672011134 (6)emb|CDP09307.1|4e-54unnamed protein product [Coffea canephora]
JMFF039P01Sequence527011134 (6)emb|CDP09307.1|3e-64unnamed protein product [Coffea canephora]641011134 (6)emb|CDP09307.1|2e-54unnamed protein product [Coffea canephora]
JMSF011C23Sequence396011134 (6)emb|CDP09307.1|1e-46unnamed protein product [Coffea canephora]715011134 (6)emb|CDP09307.1|5e-67unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF011C23-                                          GGGTTCGCTCACGAGTCACGAATCACTGG
JMFF011H23-                                                GCTCACGAGTCACGAATCACTGG
JMFF039P01-                                                GCTCACGAGTCACGAATCACTGG
rJMSF011C23+                                               GCTCACGAGTCACGAATCACTGG
                      ____________________________________________________________
consensus                                            GGGTTCGCTCACGAGTCACGAATCACTGG
 
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JMSF011C23-           TTTTTCGTGATTGCTTCTACGTCTCCGAAATCTCCCAGTCTCTCCTGCAATCCCTTCTGC
JMFF011H23-           TTTTTCGTGATTGCTTCTACGTCTCCGAAATCTCCCAGTCTCTCCTGCAATCCCTTCTGC
JMFF039P01-           TTTTTCGTGATTGCTTCTACGTCTCCGAAATCTCCCAGTCTCTCCTGCAATCCCTTCTGC
rJMSF011C23+          TTTTTCGTGATTGCTTCTACGTCTCCGAAATCTCCCAGTCTCTCCTGCAATCCCTTCTGC
                      ____________________________________________________________
consensus             TTTTTCGTGATTGCTTCTACGTCTCCGAAATCTCCCAGTCTCTCCTGCAATCCCTTCTGC
 
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JMSF011C23-           AACTTCGTAGTTCAAGCACTGGTGTTTCCTCAATCGACATGGGTCAAATTATCGGCAAGT
JMFF011H23-           AACTTCGTAGTTCAAGCACTGGTGTTTCCTCAATCGACATGGGTCAAATTATCGGCAAGT
JMFF039P01-           AACTTCGTAGTTCAAGCACTGGTGTTTCCTCAATCGACATGGGTCAAATTATCGGCAAGT
rJMSF011C23+          AACTTCGTAGTTCAAGCACTGGTGTTTCCTCAATCGACATGGGTCAAATTATCGGCAAGT
rJMFF011H23+                                                        AATTATCGGCAAGT
                      ____________________________________________________________
consensus             AACTTCGTAGTTCAAGCACTGGTGTTTCCTCAATCGACATGGGTCAAATTATCGGCAAGT
 
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JMSF011C23-           TTCAAGGTAAAGAAGGGAGACAGAAGCAGATACGAAAGATAACAGACAAGATGTTTGATC
JMFF011H23-           TTCAAGGTAAAGAAGGGAGACAGAAGCAGATACGAAAGATAACAGACAAGATGTTTGATC
JMFF039P01-           TTCAAGGTAAAGAAGGGAGACAGAAGCAGATACGAAAGATAACAGACAAGATGTTTGATC
rJMSF011C23+          TTCAAGGTAAAGAAGGGAGACAGAAGCAGATACGAAAGATAACAGACAAGATGTTTGATC
rJMFF011H23+          TTCAAGGTAAAGAAGGGAGNCAGAAGCAGATNCGAAAGATAACAGCCAAGATGTTTGATC
rJMFF039P01+                            GACAGAAGCAGATNCGAAAGATAACAGNCAAGATGTTTGATC
                      ____________________________________________________________
consensus             TTCAAGGTAAAGAAGGGAGACAGAAGCAGATACGAAAGATAACAGACAAGATGTTTGATC
 
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JMSF011C23-           GATTCAAGAATGAAACGGGCAGAGTTAATTTGACGTTTGAAGATCTTTATATTGCTGTGC
JMFF011H23-           GATTCAAGAATGAAACGGGCAGAGTTAATTTGACGTTTGAAGATCTTTATATTGCTGTGC
JMFF039P01-           GATTCAAGAATGAAACGGGCAGAGTTAATTTGACGTTTGAAGATCTTTATATTGCTGTGC
rJMSF011C23+          GATTCAAGAATGAAACGGGCAGAGTTAATTTGACGTTTGAAGATCTTTATATTGCTGTGC
rJMFF011H23+          GATTCAAGAATGAANCGGGCAGAGTTAATTTGACGTTTGAAGATCNTTATATTGCTGTGC
rJMFF039P01+          GATTCAAGAATGAAACGGGCAGAGTTAATTTGACGTTTGAAGATNTTTATATTGCTGTGC
                      ____________________________________________________________
consensus             GATTCAAGAATGAAACGGGCAGAGTTAATTTGACGTTTGAAGATCTTTATATTGCTGTGC
 
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JMSF011C23-           TGCTTATTTTCAATGATATCAATAAGCGTTTGCCTGGGCCGCACTTTGACCCTCCTTCAA
JMFF011H23-           TGCTTATTTTCAATGATATCAATAAGCGTTTGCCTGGGCCGCACTTTGACCCTCCTTCAA
JMFF039P01-           TGCTTATTTTCAATGATATCAATAAGCGTTTGCCTGGGCCGCACTTTGACCCTCCTTCAA
rJMSF011C23+          TGCTTATTTTCAATGATATCAATAAGCGTTTGCCTGGGCCGCACTTTGACCCTCCTTCAA
rJMFF011H23+          TGCTTATTTTCAATGATATCAATAAGCGTTTGCCTGGGCCGCACTTTGACCCTCCTTCAA
rJMFF039P01+          TGCTTATTTTCAATGATATCAATAAGCGTTTGCNTGGGCCGCACTTTGACCCTCCTTCAA
                      ____________________________________________________________
consensus             TGCTTATTTTCAATGATATCAATAAGCGTTTGCCTGGGCCGCACTTTGACCCTCCTTCAA
 
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JMSF011C23-           AGGAACAAGTTAGGGAAATGATGCAGAAATATGATCTCAATCTCGATGGAGAACTCAACC
JMFF011H23-           AGGAACAAGTTAGGGAAATGATGCAGAAATATGATCTCAATCTCGATGGAGAACTCAACC
JMFF039P01-           AGGAACAAGTTAGGGAAATGATGCAGAAATATGATCTCAATCTCGATGGAGAACTCAACC
rJMSF011C23+          AGGAACAAGTTAGGGAAATGATGCAGAAATATGATCTCAATCTCGATGGAGAACTCAACC
rJMFF011H23+          AGGAACAAGTTAGGGAAATGATGCAGAAATATGATNTCAATCTNGATGGAGAACTCANCC
rJMFF039P01+          AGGAACAAGTTAGGGAAATGATGCAGAAATATGATCTCAATCTCGATGGAGAACTCANCC
                      ____________________________________________________________
consensus             AGGAACAAGTTAGGGAAATGATGCAGAAATATGATCTCAATCTCGATGGAGAACTCAACC
 
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JMSF011C23-           GCGATGA                                                     
JMFF011H23-           GCGATGAGTTTGTGGCCTTCATCTCACAATTAACTAAAGACACCTTCATCACAGTCAGTC
JMFF039P01-           GCGATGAGTTTGTGGCCTTCATCTCACAATTAACTAAAGACACCTTCATCACAGTCAGTC
rJMSF011C23+          GCGATGAGTTTGTGGCCTTCATCTCACAATTAACTAAAGACACCTTCATCACAGTCAGTC
rJMFF011H23+          GCGATGAGTTTGTGGCCTTCATCTCACAATTAACTAAAGACACCTTCATCACAGTCAGTC
rJMFF039P01+          GCGATGAGTTTGTGGCCTTCATCTCACAATTAACTAAAGACACCTTCATCACAGTCAGTC
                      ____________________________________________________________
consensus             GCGATGAGTTTGTGGCCTTCATCTCACAATTAACTAAAGACACCTTCATCACAGTCAGTC
 
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JMFF011H23-           AAGGACTGATCATCACTCTGGCTGTGGCGCCCACGCTAGCTCTGCTGACAAAGAGGACGA
JMFF039P01-           AAGGACTGATCATCACTCTGGCTGTGGCGCCCACGCTAGCTCTGCTGACNAAGAGGACGA
rJMSF011C23+          AAGGACTGATCATCACTCTGGCTGTGGCGCCCACGCTAGCTCTGCTGACAAAGAGGACGA
rJMFF011H23+          AAGGANTGATCATCACTCTGGCTGTGGCGCCCACGCTAGCTNTNCTGACAAAGAGGACGA
rJMFF039P01+          AAGGACTGATCATCACTCTGGCTGTGGCGCCCACGCTAGCTCTGCTGACAAAGAGGACGA
                      ____________________________________________________________
consensus             AAGGACTGATCATCACTCTGGCTGTGGCGCCCACGCTAGCTCTGCTGACAAAGAGGACGA
 
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JMFF011H23-           CAGAAGGAGTACCTGTTGTCGGGA                                    
JMFF039P01-           CAGAAGGAGTACCTGTTGTC                                        
rJMSF011C23+          CAGAAGGAGTACCTGTTGTCGGGAAGGTGGTGGAGAAGTTGCCCAGTTCCATCTATGCCT
rJMFF011H23+          CAGAAGGAGTACNTGTTGTCGGGAAGGTGGTGGAGAAGTTGCCCAGTTCCATCTATGCCT
rJMFF039P01+          CAGAAGGAGTACCTGTTGTCGGGAAGGTGGTGGAGAAGTTGCCCAGTTCCATCTATGCCT
                      ____________________________________________________________
consensus             CAGAAGGAGTACCTGTTGTCGGGAAGGTGGTGGAGAAGTTGCCCAGTTCCATCTATGCCT
 
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rJMSF011C23+          CCCTCGTCACCCTGACCATCGTGCTCGTCCAGCAAGCTGCCGAGGCAAAGCAGTAAAAGG
rJMFF011H23+          CCNTCGTCACCCTGACCATCGTGCTCGTCCAGCAAGCTGCCGAGGCAAAGCAGT-AAAGG
rJMFF039P01+          CCCTCGTCACCCTGACCATCGTGCTCGTCCAGCAAGCTGCCGAGGCAAAGCAGT-AAAGG
                      ____________________________________________________________
consensus             CCCTCGTCACCCTGACCATCGTGCTCGTCCAGCAAGCTGCCGAGGCAAAGCAGT-AAAGG
 
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rJMSF011C23+          TTTCTCTGCATTGTAAATAAATATTGCTAGTTTGCTACATAGTTTCTTTTCAATAACATG
rJMFF011H23+          TTTCTNTGCATNGTAAATAAATATTGNTAGTNTGCTACATAGTTTCTTTTCAATAACATG
rJMFF039P01+          TTTCTNTGCATTGTAAATAAATATTGCTAGTTTGCTACATAGTTTCTTTTCAATAACATG
                      ____________________________________________________________
consensus             TTTCTCTGCATTGTAAATAAATATTGCTAGTTTGCTACATAGTTTCTTTTCAATAACATG
 
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rJMSF011C23+          CCAGTAGACTTGACTGTAC                                         
rJMFF011H23+          CCAGTAGACTTGACTGTACATGAACTTAAACACAGCTATTCTGGCTTTGAGATGGAAGGT
rJMFF039P01+          CCAGTAGACTTGACTGTACATGAACTTAAACACAGCTATTCTGGCTTTGAGATGGAAGGT
                      ____________________________________________________________
consensus             CCAGTAGACTTGACTGTACATGAACTTAAACACAGCTATTCTGGCTTTGAGATGGAAGGT
 
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rJMFF011H23+          TTCTGGTTATGCTTTCAATTNTGAATTAGTGAATTACAAGTTTCAAACTTTTGTGCTGT 
rJMFF039P01+          TTCTGGTTATGCTTTCAATTCTGAATTAGTGAATTACAAGTTTCAAACTTTTGTGCTGTT
                      ____________________________________________________________
consensus             TTCTGGTTATGCTTTCAATTCTGAATTAGTGAATTACAAGTTTCAAACTTTTGTGCTGTT