| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039N21 | Sequence | 565 | 011133 (6) | emb|CDP16677.1| | 1e-61 | unnamed protein product [Coffea canephora] | 757 | 011133 (6) | ref|XP_011098856.1| | 1e-65 | PREDICTED: probable adenylate kinase 7, mitochondrial [Sesamum indicum] |
| JMSF011P18 | Sequence | 260 | 011133 (6) | ref|XP_009604231.1| | 5e-10 | PREDICTED: probable adenylate kinase 7, mitochondrial [Nicotiana tomentosiformi | 746 | 011133 (6) | ref|NP_001275428.1| | 1e-108 | adenylate kinase family-like protein [Solanum tuberosum] gb|ABB16966.1| adenylat |
| JMSF040E15 | Sequence | 706 | 011133 (6) | gb|ABB02652.1| | 1e-67 | adenylate kinase family-like protein [Solanum tuberosum] | 862 | 011133 (6) | ref|NP_001275428.1| | 2e-111 | adenylate kinase family-like protein [Solanum tuberosum] gb|ABB16966.1| adenylat |
This contig is upended
. : . : . : . : . : . :
JMFF039N21- GCCCCCACA
JMSF040E15- GATCTCTAAAACCTCCGCCCCCACA
____________________________________________________________
consensus GATCTCTAAAACCTCCGCCCCCACA
. : . : . : . : . : . :
JMSF011P18- GTGCTCCATGGCCA
JMFF039N21- CTCCTTGGAAACCCTCTTTAGGCGGCGCCTCTCTCCTCTCTTGCCCGTGCTCCATGGCCA
JMSF040E15- CTCCTTGGAAACCCTCTTTAGGCGGCGCCTCTCTCCTCTCTTGCCCGTGCTCCATGGCCA
____________________________________________________________
consensus CTCCTTGGAAACCCTCTTTAGGCGGCGCCTCTCTCCTCTCTTGCCCGTGCTCCATGGCCA
. : . : . : . : . : . :
JMSF011P18- TGGCCTTACTCAGCCGCATCAGACTCGCTGCGCGATTGTCGTGCCCAATCAACCGGGCCT
JMFF039N21- TGGCCTTACTCAGCCGCATCAGACTCGCTGCGCGATTGTCGTGCCCAATCAACCGGGCCT
JMSF040E15- TGGCCTTACTCAGCCGCATCAGACTCGCTGCGCGATTGTCGTGCCCAATCAACCGGGCCT
____________________________________________________________
consensus TGGCCTTACTCAGCCGCATCAGACTCGCTGCGCGATTGTCGTGCCCAATCAACCGGGCCT
. : . : . : . : . : . :
JMSF011P18- ATGGATCTGCTGCCGCCGTTCAGCTCGATTACGACTTCGATTATTACGATAACCAAGACA
JMFF039N21- ATGGATCTGCTGCCGCCGTTCAGCTCGATTACGACTTCGATTATTACGATAACCAAGACA
JMSF040E15- ATGGATCTGCTGCCGCCGTTCAGCTCGATTACGACTTCGATTATTACGATAACCAAGACA
rJMSF040E15+ ATCTGCTGCCGCCGTTCAGCTCGATTACGACTTCGATTATTACGATAACCAAGACA
____________________________________________________________
consensus ATGGATCTGCTGCCGCCGTTCAGCTCGATTACGACTTCGATTATTACGATAACCAAGACA
. : . : . : . : . : . :
JMSF011P18- ACGACGCCGGAATTTATTCCTCCAACCGGATCATGGAGGATTCTGATGGATTGGTGCCGG
JMFF039N21- ACGACGCCGGAATTTATTCCTCCAACCGGATCATGGAGGATTCTGATGGATTGGTGCCGG
JMSF040E15- ACGACGCCGGAATTTATTCCTCCAACCGGATCATGGAGGATTCTGATGGATTGGTGCCGG
rJMSF011P18+ TGATGGATTGGTGCCGG
rJMSF040E15+ ACGACGCCGGAATTTATTCCTCCAACCGGATCATGGAGGATTCTGATGGATTGGTGCCGG
____________________________________________________________
consensus ACGACGCCGGAATTTATTCCTCCAACCGGATCATGGAGGATTCTGATGGATTGGTGCCGG
. : . : . : . : . : . :
JMSF011P18- GAAGAGGAGTTCAGTGGGTGATCATAGGTGACCCCATGGCAAAGAGAAACGTCTATGCTC
JMFF039N21- GAAGAGGAGTTCAGTGGGTGATCATAGGTGACCCCATGGCAAAGAGAAACGTCTATGCTC
JMSF040E15- GAAGAGGAGTTCAGTGGGTGATCATAGGTGACCCCATGGCAAAGAGAAACGTCTATGCTC
rJMSF011P18+ GAAGAGGAGTTCAGTGGGTGATCATAGGTGACCCCATGGCAAAGAGAAACGTCTATGCTC
rJMSF040E15+ GAAGAGGAGTTCAGTGGGTGATCATAGGTGACCCCATGGCAAAGAGAAACGTCTATGCTC
____________________________________________________________
consensus GAAGAGGAGTTCAGTGGGTGATCATAGGTGACCCCATGGCAAAGAGAAACGTCTATGCTC
. : . : . : . : . : . :
JMSF011P18- AGTGG
JMFF039N21- AGTGGCTCTCCAAGCTTCTGGATGTTCCCCACATTTCCATGGGCTCTCTCGTCCGTCAAG
JMSF040E15- AGTGGCTCTCCAAGCTTCTGGATGTTCCCCACATTTCCATGGGCTCTCTCGTCCGTCAAG
rJMSF011P18+ AGTGGCTCTCCAAGCTTCTGGATGTTCCCCACATTTCCATGGGCTCTCTCGTCCGTCAAG
rJMSF040E15+ AGTGGCTCTCCAAGCTTCTGGATGTTCCCCACATTTCCATGGGCTCTCTCGTCCGTCAAG
____________________________________________________________
consensus AGTGGCTCTCCAAGCTTCTGGATGTTCCCCACATTTCCATGGGCTCTCTCGTCCGTCAAG
. : . : . : . : . : . :
JMFF039N21- AACTCCACCCTCATTCTTCTCTTCACAACCAGATAGCAGGTGCTGTAAATGAGGGGAAGC
JMSF040E15- AACTCCACCCTCATTCTTCTCTTCACAACCAGATAGCAGGTGCTGTAAATGAGGGGAAGC
rJMSF011P18+ AACTCCACCCTCATTCTTCTCTTCACAACCAGATAGCAGGTGCTGTAAATGAGGGGAAGC
rJMSF040E15+ AACTCCACCCTCATTCTTCTCTTCACAACCAGATAGCAGGTGCTGTAAATGAGGGGAAGC
rJMFF039N21+ TTCACANCCAGATAGCAGGTGCTGTAAATGAGGGGAAGC
____________________________________________________________
consensus AACTCCACCCTCATTCTTCTCTTCACAACCAGATAGCAGGTGCTGTAAATGAGGGGAAGC
. : . : . : . : . : . :
JMFF039N21- TAGTTCC-GGCAGAAGTAATTTTTAGGCTGTTGTCAAAGAGACTGGAAGAAGGGTACTGC
JMSF040E15- TAGTTCC-GGCAGAAGTAATTTTTAGGCTGTTGTCAAAGAGACTGGAAGAAGGGTACTGC
rJMSF011P18+ TAGTTCC-GGCAGAAGTAATTTTTAGGCTGTTGTCAAAGAGACTGGAAGAAGGGTACTGC
rJMSF040E15+ TAGTTCC-GGCAGAAGTAATTTTTAGGCTGTTGTCAAAGAGACTGGAAGAAGGGTACTGC
rJMFF039N21+ TAGTTCCGGGCAGAAGTAATTTTTAGGCTGTTGTCAAAGAGACTGGAAGAAGGGTACTGC
____________________________________________________________
consensus TAGTTCC-GGCAGAAGTAATTTTTAGGCTGTTGTCAAAGAGACTGGAAGAAGGGTACTGC
. : . : . : . : . : . :
JMFF039N21- AGGGGTGAAAATGGTTTCATTTTGGATGGGATCCCTCGAACTAAGGTTCAAGCTGAAATC
JMSF040E15- AGGGGTGAAAATGGTTTCATTTTGGATGGGATCCCTCGAACTAAGGTTCAAGCTGAAATC
rJMSF011P18+ AGGGGTGAAAATGGTTTCATTTTGGATGGGATCCCTCGAACTAAGGTTCAAGCTGAAATC
rJMSF040E15+ AGGGGTGAAAATGGTTTCATTTTGGATGGGATCCCTCGAACTAAGGTTCAAGCTGAAATC
rJMFF039N21+ AGGGGTGAAAATGGTTTCATTTTGGATGGGATCCCTCGAACTAAGGTTCAAGCTGAAATC
____________________________________________________________
consensus AGGGGTGAAAATGGTTTCATTTTGGATGGGATCCCTCGAACTAAGGTTCAAGCTGAAATC
. : . : . : . : . : . :
JMFF039N21- CTGGACCAAGTTGTGGC
JMSF040E15- CTGGACCAAGTTGTGGCCATAGACCTGGTTCTGAATCTCAAGTGCCAAGATGATTCCATG
rJMSF011P18+ CTGGACCAAGTTGTGGCCATAGACCTGGTTCTGAATCTCAAGTGCCAAGATGATTCCATG
rJMSF040E15+ CTGGACCAAGTTGTGGCCATAGACCTGGTTCTGAATCTCAAGTGCCAAGATGATTCCATG
rJMFF039N21+ CTGGACCAAGTTGTGGCCATAGACCTGGTTCTGAATCTCAAGTGCCAAGATGATTCCATG
____________________________________________________________
consensus CTGGACCAAGTTGTGGCCATAGACCTGGTTCTGAATCTCAAGTGCCAAGATGATTCCATG
. : . : . : . : . : . :
JMSF040E15- GTGAAAGAAATGTGCAAATAGTGGGATCCATCCATGTCAAGAATTTCTCTGCATGACTGC
rJMSF011P18+ GTG-AAGAAATGTGCAAATAGTGGGATCCATCCATGTCAAGAATTTCTCTGCATGACTGC
rJMSF040E15+ GTG-AAGAAATGTGCAAATAGTGGGATCCATCCATGTCAAGAATTTCTCTGCATGACTGC
rJMFF039N21+ GTG-AAGAAATGTGCAAATAGTGGGATCCATCCATGTCAAGAATTTCTCTGCATGACTGC
____________________________________________________________
consensus GTG-AAGAAATGTGCAAATAGTGGGATCCATCCATGTCAAGAATTTCTCTGCATGACTGC
. : . : . : . : . : . :
JMSF040E15- CTCTAAATTTGATCTTGGTCCA
rJMSF011P18+ CTCTAAATTTGATCTTGGTCCACAGCCAGATGATGGTAATTTGAAGTTTACCAATTATTC
rJMSF040E15+ CTCTAAATTTGATCTTGGTCCACAGCCAGATGATGGTAATTTGAAGTTTACCAATTATTC
rJMFF039N21+ CTCTAAATTTGATCTTGGTCCACAGCCAGATGATGGTAATTTGAAGTTTACCAATTATCC
____________________________________________________________
consensus CTCTAAATTTGATCTTGGTCCACAGCCAGATGATGGTAATTTGAAGTTTACCAATTATTC
. : . : . : . : . : . :
rJMSF011P18+ AGATGGTGTGTGGAGGGAGAAATTGCGTGTATATGCTGAGCAGAGCCAACCATTAGAAGA
rJMSF040E15+ AGATGGTGTGTGGAGGGAGAAATTGCGTGTATATGCTGAGCAGAGCCAACCATTAGAAGA
rJMFF039N21+ AGATGGTGTGTGGAGGGAGAAATTGCGTGTATATGCTGAGCAGAGCCAACCATTAGAAGA
____________________________________________________________
consensus AGATGGTGTGTGGAGGGAGAAATTGCGTGTATATGCTGAGCAGAGCCAACCATTAGAAGA
. : . : . : . : . : . :
rJMSF011P18+ ATACTACAGGAAACAGAGGAAGCTCTTGGACTTTCAAGTGTCTGGGGCACCAGGAGAAAC
rJMSF040E15+ ATACTACAGGAAACAGAGGAAGCTCTTGGACTTTCAAGTGTCTGGGGCACCAGGAGAAAC
rJMFF039N21+ ATACTACAGGAAACAGAGGAAGCTCTTGGACTTTCAAGTGTCTGGGGCACCAGGAGAAAC
____________________________________________________________
consensus ATACTACAGGAAACAGAGGAAGCTCTTGGACTTTCAAGTGTCTGGGGCACCAGGAGAAAC
. : . : . : . : . : . :
rJMSF011P18+ ATGGCAAGGCCTCCTGGCTGCTTTGCATCTGGAGCACATGAATGTTGTCAGTTCTTCACA
rJMSF040E15+ ATGGCAAGGCCTCCTGGCTGCTTTGCATCTGGAGCACATGAATGTTGTCAGTTCTTCACA
rJMFF039N21+ ATGGCAAGGCCTCCTGGCTGCTTTGCATCTGGAGCACATGAATGTTGTCAGTTCTTCACA
____________________________________________________________
consensus ATGGCAAGGCCTCCTGGCTGCTTTGCATCTGGAGCACATGAATGTTGTCAGTTCTTCACA
. : . : . : . : . : . :
rJMSF011P18+ GAAGTTGACTGCTTGATGCTGAATTGAATTCAACTCAGTAATTAGTATAGGCATACTACC
rJMSF040E15+ GAAGTTGACTGCTTGATGCTG-ATTGAATTCAACTCAGTAATTAGTATAGGCATACTACC
rJMFF039N21+ GAAGTTGACTGCTTGATGCTG-ATTGAATTCAACTCAGTAATTAGTATAGGCATACTACC
____________________________________________________________
consensus GAAGTTGACTGCTTGATGCTG-ATTGAATTCAACTCAGTAATTAGTATAGGCATACTACC
. : . : . : . : . : . :
rJMSF011P18+ GAGTGTA
rJMSF040E15+ GAGTGTATTATAGCTAAAAAATTT
rJMFF039N21+ GAGTGTATTATAGCTAAAAAATTTTGCGGGACAATACAATTTTGTTTTCATTTTTGTTTG
____________________________________________________________
consensus GAGTGTATTATAGCTAAAAAATTTTGCGGGACAATACAATTTTGTTTTCATTTTTGTTTG
. : . : . : . : . : . :
rJMFF039N21+ CCAAGTGTGTACAAGTAGCAAAGAGCCAGAGTAGTAGAGAAACTAGCATTATTGACTATG
____________________________________________________________
consensus CCAAGTGTGTACAAGTAGCAAAGAGCCAGAGTAGTAGAGAAACTAGCATTATTGACTATG
. : . : . : . : . : . :
rJMFF039N21+ ATGTATGTTCAACACTTCTTTATGCTCCTTTCTCTTGGTGTTGATTTCATATTTTGATAA
____________________________________________________________
consensus ATGTATGTTCAACACTTCTTTATGCTCCTTTCTCTTGGTGTTGATTTCATATTTTGATAA