| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001E16 | Sequence | 551 | 001657 (14) | ref|XP_009596867.1| | 8e-87 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana tomentosiformis] | 646 | 011128 (8) | ref|XP_007207287.1| | 4e-84 | hypothetical protein PRUPE_ppa001607m1g, partial [Prunus persica] gb|EMJ08486.1| |
| JMFF017D13 | Sequence | 527 | 001657 (14) | ref|XP_009786785.1| | 1e-81 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana sylvestris] gb|ACS | 689 | 011128 (8) | ref|XP_009787355.1| | 4e-73 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana sylvestris] |
| JMFF017L14 | Sequence | 603 | 001657 (14) | ref|XP_009596867.1| | 1e-99 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana tomentosiformis] | 759 | 011128 (8) | ref|XP_009786804.1| | 6e-90 | PREDICTED: cell division cycle protein 48 homolog, partial [Nicotiana sylvestri |
| JMFF019A10 | Sequence | 553 | 001657 (14) | ref|XP_009786785.1| | 7e-87 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana sylvestris] gb|ACS | 705 | 011128 (8) | ref|XP_009787355.1| | 4e-124 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana sylvestris] |
| JMFF022J24 | Sequence | 466 | 001657 (14) | gb|KDO49337.1| | 1e-67 | hypothetical protein CISIN_1g0036232mg, partial [Citrus sinensis] gb|KDO49338.1| | 731 | 011128 (8) | ref|XP_009787355.1| | 2e-131 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana sylvestris] |
| JMFF038J16 | Sequence | 551 | 001657 (14) | ref|XP_009596867.1| | 7e-87 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana tomentosiformis] | 552 | 011128 (8) | ref|XP_009593345.1| | 2e-78 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana tomentosiformis] |
| JMFS104B07 | Sequence | 600 | 011128 (8) | ref|NP_001142062.1| | 2e-124 | uncharacterized protein LOC100274218 [Zea mays] gb|ACF87566.1| unknown [Zea mays | |||||
| JMSF024E23 | Sequence | 663 | 001657 (14) | ref|XP_009786785.1| | 2e-115 | PREDICTED: cell division cycle protein 48 homolog [Nicotiana sylvestris] gb|ACS | 753 | 011128 (8) | ref|XP_009786804.1| | 3e-127 | PREDICTED: cell division cycle protein 48 homolog, partial [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
JMFS104B07- TCCTTCTGCTTTGCGTGAGACAGTTGTTGAAGTGCCCAAT
____________________________________________________________
consensus TCCTTCTGCTTTGCGTGAGACAGTTGTTGAAGTGCCCAAT
. : . : . : . : . : . :
JMFS104B07- GTCAGCTGGCAAGATATTGGAGGCCTTGAAAATGTTAAGAGAGAGCTTCAAGAGACTGTT
____________________________________________________________
consensus GTCAGCTGGCAAGATATTGGAGGCCTTGAAAATGTTAAGAGAGAGCTTCAAGAGACTGTT
. : . : . : . : . : . :
JMFS104B07- CAATATCCTGTGGAACACCCAGAGAAATTCGAGAAATTTGGCATGTCACCTTCCAAAGGT
____________________________________________________________
consensus CAATATCCTGTGGAACACCCAGAGAAATTCGAGAAATTTGGCATGTCACCTTCCAAAGGT
. : . : . : . : . : . :
JMFS104B07- GTTCTTTTCTATGGTCCCCCAGGATGTGGGAAAACTCTACTGGCCAAGGCAATAGCAAAT
____________________________________________________________
consensus GTTCTTTTCTATGGTCCCCCAGGATGTGGGAAAACTCTACTGGCCAAGGCAATAGCAAAT
. : . : . : . : . : . :
JMFS104B07- GAATGTCAAGCCAACTTCATTAGTGTTAAAGGGCCAGAATTGCTCACCATGTGGTTTGGA
____________________________________________________________
consensus GAATGTCAAGCCAACTTCATTAGTGTTAAAGGGCCAGAATTGCTCACCATGTGGTTTGGA
. : . : . : . : . : . :
JMFS104B07- GAGAGTGAGGCCAATGTTCGAGAAATTTTTGACAAGGCTAGAGGATCAGCCCCATGTGTT
rJMFF022J24+ ATCAGCGCCATGTGTT
____________________________________________________________
consensus GAGAGTGAGGCCAATGTTCGAGAAATTTTTGACAAGGCTAGAGGATCAGCGCCATGTGTT
. : . : . : . : . : . :
JMFS104B07- CTGTTCTTTGATGAGCTTGACTCTATTGCCACTCAGAGAGGAAGCAGTGTTGGAGATGCT
rJMFF022J24+ CTCTTCTTTGATGAGCTTGACTCGATTGCCACTCAGAGGGGAAGCAGCGTCGGGGATGCT
rJMSF024E23+ TCGGGGATGCT
rJMFF019A10+ ATGAGCTTGACTCGATTGCCACTCAGAGGGGAAGCAGCGTCGGGGATGCT
rJMFF017L14+ GACTCGATTGCCACTCAGAGGGGAAGCAGCGTCGGGGATGCT
____________________________________________________________
consensus CTGTTCTTTGATGAGCTTGACTCGATTGCCACTCAGAGGGGAAGCAGCGTCGGGGATGCT
. : . : . : . : . : . :
JMFS104B07- GGTGGTGCAGCTGATCGAGTTCTTAACCAACTTCTGACTGAAATGGATGGCATGACTGCA
rJMFF022J24+ GGTGGTGCAGCTGATCGGGTTCTTAACCAACTTCTAACTGAAATGGATGGCATGACTGCA
rJMSF024E23+ GGTGGTGCAGCTGATCGGGTTCTTAACCAACTTCTAACTGAAATGGATGGCATGACTGCA
rJMFF019A10+ GGTGGTGCAGCTGATCGGGTTCTTAACCAACTTCTAACTGAAATGGATGGCATGACTGCA
rJMFF017L14+ GGTGGTGCAGCTGATCGGGTTCTTAACCAACTTCTAACTGAAATGGATGGCATGACTGCA
____________________________________________________________
consensus GGTGGTGCAGCTGATCGGGTTCTTAACCAACTTCTAACTGAAATGGATGGCATGACTGCA
. : . : . : . : . : . :
JMFS104B07- -AAGAAGACTGTTTTCATAATTGGGGCTACAAATAGGCCTGATATAATTGATCCTGCTCT
rJMFF022J24+ -AAAAAGACTGTTTTCATAATTGGGGCTACAAACAGACCTGACATAATTGACCCTGCACT
rJMSF024E23+ -AAAAAGACTGTTTTCATAATTGGGGCTACAAACAGACCTGACATAATTGACCCTGCACT
rJMFF019A10+ -AAAAAGACTGTTTTCATAATTGGGGCTACAAACAGACCTGACATAATTGACCCTGCACT
rJMFF017L14+ NNAAAAGACTGTTTTCATAATTGGGGCTACAAACAGACCTGACATAATTGACCCTGCACT
____________________________________________________________
consensus -AAAAAGACTGTTTTCATAATTGGGGCTACAAACAGACCTGACATAATTGACCCTGCACT
. : . : . : . : . : . :
JMFS104B07- TCTTCGCCCTGGCCGACTTGATCAGTTAATTTATATTCCTCTTCCTGATGAAGATTCACG
rJMFF022J24+ CCTTCGTCCTGGCAGACTTGATCAATTAATTTATATCCCTCTCCCTGATGAGGATTCACG
rJMSF024E23+ CCTTCGTCCTGGCAGACTTGATCAATTAATTTATATCCCTCTCCCTGATGAGGATTCACG
rJMFF017D13+ TGGCAGACTTGATCAATTAATTTATATCCCTCTCCCTGATGAGGATTCACG
rJMFF001E16+ GATGAGGATTCACG
rJMFF019A10+ CCTTCGTCCTGGCAGACTTGATCAATTAATTTATATCCCTCTCCCTGATGAGGATTCACG
rJMFF017L14+ CCTTCGTCCTGGCAGACTTGATCAATTAATTTATATCCCTCTCCCTGATGAGGATTCACG
rJMFF038J16+ TGATGAGGATTCACG
____________________________________________________________
consensus CCTTCGTCCTGGCAGACTTGATCAATTAATTTATATCCCTCTCCCTGATGAGGATTCACG
. : . : . : . : . : . :
JMFS104B07- CCATCAGATCTTCAAGGCTTG
rJMFF022J24+ CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
rJMSF024E23+ CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
rJMFF017D13+ CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
rJMFF001E16+ CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
rJMFF019A10+ CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
rJMFF017L14+ CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
rJMFF038J16+ CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
____________________________________________________________
consensus CCACCAGATTTTCAAGGCTTGCCTTAGAAAATCTCCTCTTTCAAAAGATATTGATCTGCG
. : . : . : . : . : . :
rJMFF022J24+ AGCTCTTGCAAAATACACTCATGGATTT-AGTGGAGCTGATATTACAGAAATCTGCCAGC
rJMSF024E23+ AGCTCTTGCAAAATACACTCATGGATTT-AGTGGAGCTGATATTACAGAAATCTGCCAGC
rJMFF017D13+ AGCTCTTGCAAAATACACTCATGGATTTCNGTGGAGCTGATATTACAGAAATCTGCCAGC
rJMFF001E16+ AGCTCTTGCAAAATACACTCATGGATTT-AGTGGAGCTGATATTACAGAAATCTGCCAGC
rJMFF019A10+ AGCTCTTGCAAAATACACTCATGGATTT-AGTGGAGCTGATATTACAGAAATCTGCCAGC
rJMFF017L14+ AGCTCTTGCAAAATACACTCATGGATTT-AGTGGAGCTGATATTACAGAAATCTGCCAGC
rJMFF038J16+ AGCTCTTGCAAAATACACTCATGGATTT-AGTGGAGCTGATATTACAGAAATCTGCCAGC
____________________________________________________________
consensus AGCTCTTGCAAAATACACTCATGGATTT-AGTGGAGCTGATATTACAGAAATCTGCCAGC
. : . : . : . : . : . :
rJMFF022J24+ GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
rJMSF024E23+ GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
rJMFF017D13+ GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
rJMFF001E16+ GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
rJMFF019A10+ GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
rJMFF017L14+ GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
rJMFF038J16+ GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
____________________________________________________________
consensus GAGCCTGCAAATATGCCATTAGGGAGAACATTGAGAAAGATATAGAGAGGGAGAAGAGGA
. : . : . : . : . : . :
rJMFF022J24+ GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGG-AGATTAAG
rJMSF024E23+ GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGG-AGATTAAG
rJMFF017D13+ GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGG-AGATTAAG
rJMFF001E16+ GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGG-AGATTAAG
rJMFF019A10+ GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGG-AGATTAAG
rJMFF017L14+ GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGGCGGATTAAG
rJMFF038J16+ GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGG-AGATTAAG
____________________________________________________________
consensus GAAGTGAGAATCCTGATTCCATGGATGAGGATGTTGAGGATGAAATATCGG-AGATTAAG
. : . : . : . : . : . :
rJMFF022J24+ CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
rJMSF024E23+ CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
rJMFF017D13+ CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
rJMFF001E16+ CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
rJMFF019A10+ CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
rJMFF017L14+ CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
rJMFF038J16+ CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
____________________________________________________________
consensus CCTGCACATTTTGAGGAGTCCATGAAGTATGCTCGTCGCAGCGTTAGTGATGCTGATATA
. : . : . : . : . : . :
rJMFF022J24+ CGCAAGTACCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
rJMSF024E23+ CGCAAGTACCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
rJMFF017D13+ CGCAAGTAGCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
rJMFF001E16+ CGCAAGTACCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
rJMFF019A10+ CGCAAGTACCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
rJMFF017L14+ CGCAAGTACCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
rJMFF038J16+ CGCAAGTACCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
____________________________________________________________
consensus CGCAAGTACCAGGCATTTGCTCAGACGTTGCAGCAGTCTCGAGGCTTTGGAACCGAGTTC
. : . : . : . : . : . :
rJMFF022J24+ CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGAGCTGACCCGTTTGCGACATCCACT
rJMSF024E23+ CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGAGCTGACCCGTTTGCGACATCCACT
rJMFF017D13+ CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGAGCTGACCCGTTTGCGACATCCACT
rJMFF001E16+ CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGAGCTGACCCGTTTGCGACATCCACT
rJMFF019A10+ CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGAGCTGACCCGTTTGCGACATCCACT
rJMFF017L14+ CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGA-CTGACCCGTTTGCGACATCCACT
rJMFF038J16+ CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGA-CTGACCCGTTTGCGACATCCACT
____________________________________________________________
consensus CGCTTTGCTGAGTCAGGATCCGGCGGTGCTTCCGGAGCTGACCCGTTTGCGACATCCACT
. : . : . : . : . : . :
rJMFF022J24+ GCTGGAGCCGATGAAGATGACTTGTATAGTTAAGACATGTTAGAATGTCCTCCTACCC
rJMSF024E23+ GCTGGAGCCGATGAAGATGACTTGTATAGTTAAG
rJMFF017D13+ GCTGGAGCCGATGAAGATGACTTGTATAGTTAAG
rJMFF001E16+ GCTGGAGCCGATGAAGATGACTTGTATAGTTAAG
rJMFF019A10+ GCTGGAGCCGATGAAGATGACTTGTATAGTTAAGACATGTTAGAATGTCCTCCTACCC
rJMFF017L14+ GCTGGAGCCGATGAAGATGACTTGTATAGTTAAGACATGTTAGAATGTCCTCCTACCCTT
rJMFF038J16+ GCTGGAGCCGATGAAGATGACTTGTATAGTTAAGACATGTTAGAATGTCCTCCTACCCTT
____________________________________________________________
consensus GCTGGAGCCGATGAAGATGACTTGTATAGTTAAGACATGTTAGAATGTCCTCCTACCCTT
. : . : . : . : . : . :
rJMFF017L14+ GTTATTTTTTTGCAATGACACTTCTGCTTCATTCATTGCTCCCATGACTACTGATTAAC
rJMFF038J16+ GTTATTTTTTTGCAATGACACTTCTGCTTCATTCATTGCTCCCATGACTACTGATTAACT
____________________________________________________________
consensus GTTATTTTTTTGCAATGACACTTCTGCTTCATTCATTGCTCCCATGACTACTGATTAACT