| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002M06 | Sequence | 590 | 010710 (10) | ref|XP_004232400.1| | 8e-87 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 696 | 011127 (9) | gb|EYU29487.1| | 6e-126 | hypothetical protein MIMGU_mgv1a0028802mg, partial [Erythranthe guttata] gb|EYU |
| JMFF009O15 | Sequence | 598 | 010710 (10) | ref|XP_004232400.1| | 5e-83 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 756 | 011127 (9) | gb|EYU29487.1| | 7e-113 | hypothetical protein MIMGU_mgv1a0028802mg, partial [Erythranthe guttata] gb|EYU |
| JMFF017L20 | Sequence | 572 | 011127 (9) | gb|KJB48415.1| | 3e-131 | hypothetical protein B456_008G068200 [Gossypium raimondii] | |||||
| JMFF022H02 | Sequence | 521 | 010710 (10) | ref|XP_009794665.1| | 5e-58 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 450 | 011127 (9) | ref|XP_006573312.1| | 1e-42 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochond |
| JMFF038I06 | Sequence | 549 | 010710 (10) | ref|XP_009794665.1| | 6e-77 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 781 | 011127 (9) | gb|EYU29487.1| | 5e-116 | hypothetical protein MIMGU_mgv1a0028802mg, partial [Erythranthe guttata] gb|EYU |
| JMFF039L11 | Sequence | 586 | 010710 (10) | ref|XP_004232400.1| | 2e-85 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 752 | 011127 (9) | gb|EYU29487.1| | 6e-112 | hypothetical protein MIMGU_mgv1a0028802mg, partial [Erythranthe guttata] gb|EYU |
| JMFF049B05 | Sequence | 633 | 010710 (10) | ref|XP_004232400.1| | 5e-96 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 613 | 011127 (9) | gb|EYU29487.1| | 1e-83 | hypothetical protein MIMGU_mgv1a0028802mg, partial [Erythranthe guttata] gb|EYU |
| JMSF023N21 | Sequence | 599 | 010710 (10) | ref|XP_004232400.1| | 4e-78 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 784 | 011127 (9) | ref|XP_011097110.1| | 4e-174 | PREDICTED: LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprote |
| JMSF039E23 | Sequence | 711 | 010710 (10) | ref|XP_004232400.1| | 3e-117 | PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho | 856 | 011127 (9) | ref|XP_011097110.1| | 7e-155 | PREDICTED: LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprote |
This contig is upended
. : . : . : . : . : . :
JMFF017L20- AT
____________________________________________________________
consensus AT
. : . : . : . : . : . :
JMFF017L20- AAAGATGGAAGCTGCCAAGGTGTAATTGCTCTAAATATGGAGGATGGTACTTTACATCGC
____________________________________________________________
consensus AAAGATGGAAGCTGCCAAGGTGTAATTGCTCTAAATATGGAGGATGGTACTTTACATCGC
. : . : . : . : . : . :
JMFF017L20- TTCCGTGCTGCTTCTACAATTTTGGCCACAGGGGGATATGGCAGAACGTATTTCTCTGCA
____________________________________________________________
consensus TTCCGTGCTGCTTCTACAATTTTGGCCACAGGGGGATATGGCAGAACGTATTTCTCTGCA
. : . : . : . : . : . :
JMFF017L20- ACCTCAGCTCATACTTGCACAGGAGATGGGAATGCTATGGTTGCACGTGCTGGGCTTCCT
____________________________________________________________
consensus ACCTCAGCTCATACTTGCACAGGAGATGGGAATGCTATGGTTGCACGTGCTGGGCTTCCT
. : . : . : . : . : . :
JMFF017L20- CTCCAGGACCTTGAGTTTGTGCAATTCCATCCAACTGGTATATATGGAGCTGGTTGTCTA
____________________________________________________________
consensus CTCCAGGACCTTGAGTTTGTGCAATTCCATCCAACTGGTATATATGGAGCTGGTTGTCTA
. : . : . : . : . : . :
JMFF017L20- ATTACTGAAGGGTCTCGTGGTGAAGGTGGGATTCTCAGGAATAGTGAAGGTGAGCGATTT
____________________________________________________________
consensus ATTACTGAAGGGTCTCGTGGTGAAGGTGGGATTCTCAGGAATAGTGAAGGTGAGCGATTT
. : . : . : . : . : . :
JMFF017L20- ATGGAACGGTATGCACCAACAGCCAAGGATCTTGCATCTAGGGATGTTGTTTCAAGGTCT
____________________________________________________________
consensus ATGGAACGGTATGCACCAACAGCCAAGGATCTTGCATCTAGGGATGTTGTTTCAAGGTCT
. : . : . : . : . : . :
JMFF017L20- ATGACAATGGAAATTCGTGAAGGGCGTGGTGTCGGACCACTAAAGGACCATATCTATCTC
____________________________________________________________
consensus ATGACAATGGAAATTCGTGAAGGGCGTGGTGTCGGACCACTAAAGGACCATATCTATCTC
. : . : . : . : . : . :
JMFF017L20- CACTTGAACCATTTACCTCCGGAAGTCCTTAAAGAAAGGCTTCCTGGTATCTCTGAAACT
____________________________________________________________
consensus CACTTGAACCATTTACCTCCGGAAGTCCTTAAAGAAAGGCTTCCTGGTATCTCTGAAACT
. : . : . : . : . : . :
JMFF017L20- GCTGCCATTTTTGCTGGTGTAGATGTCACAAAGGAGCCAATTCCTGTTTTACCTACTGTG
rJMSF023N21+ GGTGTAGATGTCACCAAGGAGCCNATTCCTGTTTTACCTACTGTG
____________________________________________________________
consensus GCTGCCATTTTTGCTGGTGTAGATGTCACCAAGGAGCCAATTCCTGTTTTACCTACTGTG
. : . : . : . : . : . :
JMFF017L20- CATTATAATATGGGTGGGATTCCAACAAAT
rJMSF023N21+ CNTTATNATATGGGTGGGATTCCAACAAATCACCATGGAGAGGTGGTGACTGTCAAAGGT
rJMSF039E23+ CCATGGAGAGGTGGTGACTGTCAAAGGT
____________________________________________________________
consensus CATTATAATATGGGTGGGATTCCAACAAATCACCATGGAGAGGTGGTGACTGTCAAAGGT
. : . : . : . : . : . :
rJMSF023N21+ AATGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCA
rJMSF039E23+ AATGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCA
____________________________________________________________
consensus AATGATCCTGATGCTGTAGTTCCTGGCCTAATGGCTGCTGGAGAAGCTGCCTGTGCATCA
. : . : . : . : . : . :
rJMSF023N21+ GTTCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGG
rJMSF039E23+ GTTCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGG
rJMFF002M06+ CTTGACATTGTTGTTTTTGGTCGG
rJMFF038I06+ G
____________________________________________________________
consensus GTTCATGGTGCTAACAGGCTCGGAGCAAATTCTCTTCTTGACATTGTTGTTTTTGGTCGG
. : . : . : . : . : . :
rJMSF023N21+ GCATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAG
rJMSF039E23+ GCATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAG
rJMFF002M06+ GCATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAG
rJMFF039L11+ TCCAAAGNCCAGGAGAGAAACAGAAACCTTTGGAG
rJMFF009O15+ ATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAG
rJMFF038I06+ GCATGTGCAANCCGGGTTGCAGAAATCCAAAGNCCAGGAGAGAAACAGAACCCTTNGGAG
____________________________________________________________
consensus GCATGTGCAAACCGGGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAGAAACCTTTGGAG
. : . : . : . : . : . :
rJMSF023N21+ AAGGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCA
rJMSF039E23+ AAGGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCA
rJMFF002M06+ AAGGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCA
rJMFF039L11+ AAGGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCA
rJMFF009O15+ AAGGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCA
rJMFF038I06+ AAGGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCA
____________________________________________________________
consensus AAGGATGCTGGAGAGAAGACTATTGCATGGTTGGACAAGCTTAGAAATTCAAATGGTTCA
. : . : . : . : . : . :
rJMSF023N21+ TTGCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTT
rJMSF039E23+ TTGCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTT
rJMFF002M06+ TTGCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTC
rJMFF039L11+ TTGCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTT
rJMFF009O15+ TTGCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTT
rJMFF049B05+ ATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTT
rJMFF038I06+ TTGCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTT
____________________________________________________________
consensus TTGCCCACTTCAAACATTCGATTGAACATGCAAAGAGTAATGCAAAACAATGCAGCTGTT
. : . : . : . : . : . :
rJMSF023N21+ TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
rJMSF039E23+ TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
rJMFF002M06+ TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
rJMFF039L11+ TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
rJMFF009O15+ TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
rJMFF049B05+ TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
rJMFF038I06+ TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
____________________________________________________________
consensus TTCCGCACACAAGAGACTTTAGAGGAAGGTTGTAAGTTAATTGACAACGCATGGGAGAGC
. : . : . : . : . : . :
rJMSF023N21+ TTCCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACT
rJMSF039E23+ TTCCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACT
rJMFF002M06+ TTCCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACT
rJMFF039L11+ TTCCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACT
rJMFF009O15+ TTCCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACT
rJMFF049B05+ TTCCACGACGTGAAGGTGGAAGATCGCAGTNTGATATGGAATTCAGATCTTATAGAGACT
rJMFF038I06+ TTCCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACT
____________________________________________________________
consensus TTCCACGACGTGAAGGTGGAAGATCGCAGTTTGATATGGAATTCAGATCTTATAGAGACT
. : . : . : . : . : . :
rJMSF023N21+ GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGTACTCTGCTGAAGCTAGA
rJMSF039E23+ GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGA
rJMFF002M06+ GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGA
rJMFF039L11+ GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGA
rJMFF009O15+ GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGA
rJMFF049B05+ GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGA
rJMFF022H02+ TAATGCTTGTATCACAATNCACTCTGCTGAAGCTAGA
rJMFF038I06+ GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGA
____________________________________________________________
consensus GTTGAGTTGGAAAACTTGTTGATTAATGCTTGTATCACAATGCACTCTGCTGAAGCTAGA
. : . : . : . : . : . :
rJMSF023N21+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
rJMSF039E23+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
rJMFF002M06+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
rJMFF039L11+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
rJMFF009O15+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
rJMFF049B05+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
rJMFF022H02+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
rJMFF038I06+ AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
____________________________________________________________
consensus AAAGAGAGCAGAGGCGCTCATGCCCGTGAAGATTTTACAAAAAGAGATGACGAGAAGTGG
. : . : . : . : . : . :
rJMSF023N21+ ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
rJMSF039E23+ ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
rJMFF002M06+ ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
rJMFF039L11+ ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
rJMFF009O15+ ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
rJMFF049B05+ ATGAGACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
rJMFF022H02+ ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
rJMFF038I06+ ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
____________________________________________________________
consensus ATGAAACACACATTAGGATACTGGGAGAATGAGAAAGTAAGGCTGGACTACAGGCCAGTT
. : . : . : . : . : . :
rJMSF023N21+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
rJMSF039E23+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
rJMFF002M06+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
rJMFF039L11+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
rJMFF009O15+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
rJMFF049B05+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
rJMFF022H02+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
rJMFF038I06+ CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
____________________________________________________________
consensus CACATGAACACATTGGACGATGAAATTGAAACATTTCCACCTAAGGCGCGCGTGTATTAA
. : . : . : . : . : . :
rJMSF023N21+ TCAATTTACTCAAAACGCT
rJMSF039E23+ TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
rJMFF002M06+ TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
rJMFF039L11+ TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
rJMFF009O15+ TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
rJMFF049B05+ TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
rJMFF022H02+ TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
rJMFF038I06+ TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
____________________________________________________________
consensus TCAATTTACTCAAAACGCTGTGACTCAAGAAAACTAATTTATCCAGTGTCTTTACCGTCG
. : . : . : . : . : . :
rJMSF039E23+ CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
rJMFF002M06+ CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
rJMFF039L11+ CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
rJMFF009O15+ CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
rJMFF049B05+ CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
rJMFF022H02+ CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
rJMFF038I06+ CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
____________________________________________________________
consensus CAATAAGTCTCCAATGGAGAAATTTTGTGAATAATTATTGGTCATCTGTCCTATATGATG
. : . : . : . : . : . :
rJMSF039E23+ TGATGCATAA
rJMFF002M06+ TGATGCATAACT
rJMFF039L11+ TGATGCATAACTTGAAACTGTGCATAAACTTTGGAGGCATTAGTGTTGCCTTCTGTATTC
rJMFF009O15+ TGATGCATAACTTGAAACTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF049B05+ TGATGCATAACTTGAAACTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF022H02+ TGATGCATAACTTGAAACTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
rJMFF038I06+ TGATGCATAACTTGAAACTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
____________________________________________________________
consensus TGATGCATAACTTGAAACTGTGCATAAACTTTGGAGGCATTAGTGTTGCTTTCTGTATTC
. : . : . : . : . : . :
rJMFF039L11+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF009O15+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF049B05+ CGTATTCAGTGAGGAAGCATGAGACTCCAGA
rJMFF022H02+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTC
rJMFF038I06+ CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTCACTGTAC
____________________________________________________________
consensus CGTATTCAGTGAGGAAGCATGAGACTCCAGAGCATATTGTACAACTCTCATTCACTGTAC