Contig 011121:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF037L17+                                                          TGTTCAAAGCCC
                      ____________________________________________________________
consensus                                                             TGTTCAAAGCCC
 
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rJMSF037M17+                                       ACAGATAAAGTAGANCTTGAGGATATTGAAC
rJMSF037L17+          AGTTCTTTGGCCTCATTGGAAATCCTAATACAGATAAAGTAGAACTTGAGGATATTGAAC
                      ____________________________________________________________
consensus             AGTTCTTTGGCCTCATTGGAAATCCTAATACAGATAAAGTAGAACTTGAGGATATTGAAC
 
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rJMSF037M17+          CATCAATANTTAAGNCTATGCTTCAATTTCTTTACACCGATCAGCTTCCAAATTTACANG
rJMSF037L17+          CATCAATATTTAAGGCTATGCTTCAATTTCTTTACACCGATCAGCTTCCAAATTTACATG
rJMFF036I11+                                                         CCAAATTTACATG
                      ____________________________________________________________
consensus             CATCAATATTTAAGGCTATGCTTCAATTTCTTTACACCGATCAGCTTCCAAATTTACATG
 
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rJMSF037M17+          AAATTATTGGCTCAACCTCAACGTGCACTTCAACAATCATGATGCAACATTTATTGGCTG
rJMSF037L17+          AAATTATTGGCTCAACCTCAACGTGCACTTCAACAATCATGATGCAACATTTATTGGCTG
rJMFF036I11+          AAATTATTGGCTCACCNTCAACGTGCACTTCAACAATCATGATGCAACATTTATTGGCTG
                      ____________________________________________________________
consensus             AAATTATTGGCTCAACCTCAACGTGCACTTCAACAATCATGATGCAACATTTATTGGCTG
 
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rJMSF037M17+          CAGCTGACCGGTTTGGTNTAGATAGACTGAAACAATTATGNGAGGCAAAATTGTGTGAAG
rJMSF037L17+          CAGCTGACCGGTTTGGTTTAGATAGACTGAAACAATTATGTGAGGCAAAATTGTGTGAAG
rJMFF036I11+          CAGCTGACCGGTTTGGTTTAGATAGACTGAAACAATTATGTGAGGCAAAATTGTGTGAAG
                      ____________________________________________________________
consensus             CAGCTGACCGGTTTGGTTTAGATAGACTGAAACAATTATGTGAGGCAAAATTGTGTGAAG
 
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rJMSF037M17+          AAGTAACTGTCGATACGGTGGCAACGACTCTTTCACTAGCTGATCAACATCGATNCCTCC
rJMSF037L17+          AAGTAACTGTCGATACGGTGGCAACGACTCTTTCACTAGCTGATCAACATCGATGCCTCC
rJMFF036I11+          AAGTAACTGTCGATACGGTGGCAACGACTCTTTCACTAGCTGATCAACATCGATGCCTCC
                      ____________________________________________________________
consensus             AAGTAACTGTCGATACGGTGGCAACGACTCTTTCACTAGCTGATCAACATCGATGCCTCC
 
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rJMSF037M17+          AGCTTAAGACCATATGTTTGAAATTTGCANCTACAAACNTGGG-----------AGTCTG
rJMSF037L17+          AGCTTAAGACCATATGTTTGAAATTTGCAGCTACAAACTTGGG-----------AGTCTG
rJMFF036I11+          AGCTTAAGACCATATGTTTGAAATTTGCAGCTACAAACTTGGGAGTTGTTATGCAGTCTG
                      ____________________________________________________________
consensus             AGCTTAAGACCATATGTTTGAAATTTGCAGCTACAAACTTGGG-----------AGTCTG
 
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rJMSF037M17+          AAGGGTTCAAGCACTTGGAAGAGAGCTGCCCCTCACTGTTGTNTGAGCTGTTGGAAACAG
rJMSF037L17+          AAGGGTTCAAGCACTTGGAAGAGAGCTGCCCCTCACTGTTGTCTGAGCTGTTGGAAACAG
rJMFF036I11+          AAGGGTTCAAGCACTTGGAAGAGAGCTGCCCCTCACTGTTGTCTGAGCTGTTGGAAACAG
                      ____________________________________________________________
consensus             AAGGGTTCAAGCACTTGGAAGAGAGCTGCCCCTCACTGTTGTCTGAGCTGTTGGAAACAG
 
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rJMSF037M17+          TTGCATCAATCGACGAAAAGG                                       
rJMSF037L17+          TTGCATCAATCGACGAAAAGG                                       
rJMFF036I11+          TTGCATCAATCGACGAAAAGGCAAGTCTAATCTCTAGCAGGAAGAGGAGTAGCAGCAGCA
                      ____________________________________________________________
consensus             TTGCATCAATCGACGAAAAGGCAAGTCTAATCTCTAGCAGGAAGAGGAGTAGCAGCAGCA
 
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rJMFF036I11+          TCTTTGGGGTAGACTTAGTACCCGATGGTGCTGCAGCAGAACCATTTAATCCTAATATGA
                      ____________________________________________________________
consensus             TCTTTGGGGTAGACTTAGTACCCGATGGTGCTGCAGCAGAACCATTTAATCCTAATATGA
 
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rJMFF036I11+          GGTGTTTGCGGAGGCGGATGTAATCTTGTAATTGCAATGAACGCTGGCTGGCTGGCTGGC
                      ____________________________________________________________
consensus             GGTGTTTGCGGAGGCGGATGTAATCTTGTAATTGCAATGAACGCTGGCTGGCTGGCTGGC
 
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rJMFF036I11+          TGGCTGGCTGGCTGGCTGGCTGGCCTTGTGATGAGCTATCTATTTGAAAACTACTGCACT
                      ____________________________________________________________
consensus             TGGCTGGCTGGCTGGCTGGCTGGCCTTGTGATGAGCTATCTATTTGAAAACTACTGCACT
 
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rJMFF036I11+          AATGGTTTTGTCCATATATTATATATTAGTTTAAACTTATGTAGAAACATTTCTTGTGAT
                      ____________________________________________________________
consensus             AATGGTTTTGTCCATATATTATATATTAGTTTAAACTTATGTAGAAACATTTCTTGTGAT
 
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rJMFF036I11+          TTTATGTTGTGTGAGGTTAGGCGTATGGACTGTGAATTGTTTTTGCATCCATGTTTTAGA
                      ____________________________________________________________
consensus             TTTATGTTGTGTGAGGTTAGGCGTATGGACTGTGAATTGTTTTTGCATCCATGTTTTAGA
 
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rJMFF036I11+          CACTCTTAAGTGGGGTTAGATGAGAAGTAATGGTTTTAGACATTCTGTGTTCTACTAATC
                      ____________________________________________________________
consensus             CACTCTTAAGTGGGGTTAGATGAGAAGTAATGGTTTTAGACATTCTGTGTTCTACTAATC