Contig 011110:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF046C14+                                                                CAGGGT
                      ____________________________________________________________
consensus                                                                   CAGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046C14+          ATATTGACGAATGAANCAAGGTGCCTTCGCTGTGAGACTGTAACAGCAAGGGACGAAACA
rJMFF033D17+                                   TTCGCTGTGAGACTGTANCAGCAAGGGACGAAACA
                      ____________________________________________________________
consensus             ATATTGACGAATGAANCAAGGTGCCTTCGCTGTGAGACTGTAACAGCAAGGGACGAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF046C14+          TTTTTTGACTTGAGCATTGATATTGAACAAAACAGTTCAATAACAAGCTGCCTGAAGAAT
rJMFF033D17+          TTTTTTGACTTGAGCATTGATATTGAACAAAACAGTTCAATAACAAGCTGCCTGAAGAAT
                      ____________________________________________________________
consensus             TTTTTTGACTTGAGCATTGATATTGAACAAAACAGTTCAATAACAAGCTGCCTGAAGAAT
 
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rJMSF046C14+          TTCAGTTCTACTGAGACTCTGAATGCCGAAGACAAGTTCTTTTGTGACAAGTGTTGCAGT
rJMFF033D17+          TTCAGTTCTACTGAGACTCTGAATGCCGAAGACAAGTTCTTTTGTGACAAGTGTTGCAGT
                      ____________________________________________________________
consensus             TTCAGTTCTACTGAGACTCTGAATGCCGAAGACAAGTTCTTTTGTGACAAGTGTTGCAGT
 
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rJMSF046C14+          TTGCAAGAGGCCCAAAAGAGAATGAAGATTAAAAAGCCTCCTCATATCCTAGTAATCCAT
rJMFF033D17+          TTGCAAGAGGCCCAAAAGAGAATGAAGATTAAAAAGCCTCCTCATATCCTAGTAATCCAT
                      ____________________________________________________________
consensus             TTGCAAGAGGCCCAAAAGAGAATGAAGATTAAAAAGCCTCCTCATATCCTAGTAATCCAT
 
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rJMSF046C14+          TTGAAGCGATTCAAGTATATAGAGCAACTAGGGCGGTATAAGAAGTTATCTTACCGTGTT
rJMFF033D17+          TTGAAGCGATTCAAGTATATAGAGCAACTAGGGCGGTATAAGAAGTTATCTTACCGTGTT
                      ____________________________________________________________
consensus             TTGAAGCGATTCAAGTATATAGAGCAACTAGGGCGGTATAAGAAGTTATCTTACCGTGTT
 
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rJMSF046C14+          GTCTTCCCCCTGGAGCTGAAGTTGAATAATACAGTTGAGGATGCAGACACTGAATACTCT
rJMFF033D17+          GTCTTCCCCCTGGAGCTGAAGTTGAATAATACAGTTGAGGATGCAGACACTGAATACTCT
                      ____________________________________________________________
consensus             GTCTTCCCCCTGGAGCTGAAGTTGAATAATACAGTTGAGGATGCAGACACTGAATACTCT
 
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rJMSF046C14+          TTATTTGCAGTGGTAGTCCATATTGGTAGTGGACCTAACCATGGACACTACGTCAGCCTC
rJMFF033D17+          TTATTTGCAGTGGTAGTCCATATTGGTAGTGGACCTAACCATGGACACTACGTCAGCCTC
                      ____________________________________________________________
consensus             TTATTTGCAGTGGTAGTCCATATTGGTAGTGGACCTAACCATGGACACTACGTCAGCCTC
 
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rJMSF046C14+          GTCAAAAGTCACAACCATTGGTTGTTCTTTGACGACGAGAATGTGGAGATGATCGATGAA
rJMFF033D17+          GTCAAAAGTCACAACCATTGGTTGTTCTTTGACGACGAGAATGTGGAGATGATCGATGAA
                      ____________________________________________________________
consensus             GTCAAAAGTCACAACCATTGGTTGTTCTTTGACGACGAGAATGTGGAGATGATCGATGAA
 
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rJMSF046C14+          TCTGCTGTACAGACTTTCTTTGGATCAGCCCAGGAGTACTCCAGCAACACAGATCACGGT
rJMFF033D17+          TCTGCTGTACAGACTTTCTTTGGATCAGCCCAGGAGTACTCCAGCAACACAGATCACGGT
                      ____________________________________________________________
consensus             TCTGCTGTACAGACTTTCTTTGGATCAGCCCAGGAGTACTCCAGCAACACAGATCACGGT
 
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rJMSF046C14+          TACATCCTGTTTTATGAAAGAGTCAGCAATGGCGCCACAAGCTAACAAAGATAAGCAGAC
rJMFF033D17+          TACATCCTGTTTTATGAAAGAGTCAGCAATGGCGCCACAAGCTAACAAAGATAAGCAGAC
                      ____________________________________________________________
consensus             TACATCCTGTTTTATGAAAGAGTCAGCAATGGCGCCACAAGCTAACAAAGATAAGCAGAC
 
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rJMSF046C14+          TTCCAATTTTGTGCACAATTCCTCTCATGTGGATGGTCTAATAATAATACCTTTGATTCT
rJMFF033D17+          TTCCAATTTTGTGCACAATTCCTCTCATGTGGATGGTCTAATAATAATACCTTTGATTCT
                      ____________________________________________________________
consensus             TTCCAATTTTGTGCACAATTCCTCTCATGTGGATGGTCTAATAATAATACCTTTGATTCT
 
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rJMSF046C14+          CCCTCTGTGATTTATTCTAATTTATGTACTGGGATGAGATGAATACATCGAGGTTGTTTT
rJMFF033D17+          CCCTCTGTGATTTATTCTAATTTATGTACTGGGATGAGATGAATACATCGAGGTTGTTTT
                      ____________________________________________________________
consensus             CCCTCTGTGATTTATTCTAATTTATGTACTGGGATGAGATGAATACATCGAGGTTGTTTT
 
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rJMSF046C14+          CGTGTACAGAGGTGGAAGACCACCGTACTTTACTTT                        
rJMFF033D17+          CGTGTACAGAGGTGGAAGACCACCGTACTTTACTTTTCCAACAATAAAAGGGGAAAAAGA
                      ____________________________________________________________
consensus             CGTGTACAGAGGTGGAAGACCACCGTACTTTACTTTTCCAACAATAAAAGGGGAAAAAGA