Contig 011100:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF031F13-                                                           TCTGCTACAATT
                      ____________________________________________________________
consensus                                                             TCTGCTACAATT
 
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JMFF031F13-           CTTCAATCTCATTTACCCAAAAACAGCCATTCAGAAAGCAATCCGGCGAAGAAAAGCTGT
                      ____________________________________________________________
consensus             CTTCAATCTCATTTACCCAAAAACAGCCATTCAGAAAGCAATCCGGCGAAGAAAAGCTGT
 
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JMFF031F13-           GAATTTTTTTTGAAAATGGAAATCACCGCGGGAATCAGAGCCTATGCGCTGTTGTTGATG
JMSF020A20-                                      GCGGGAATCAGAGCCTATGCGCTGTTGTTGATG
                      ____________________________________________________________
consensus             GAATTTTTTTTGAAAATGGAAATCACCGCGGGAATCAGAGCCTATGCGCTGTTGTTGATG
 
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JMFF031F13-           ATGCTGTTCAGTTTCGTCACCAATCTCTCCGCGCTATCTGTTACCGTCAACGATGTCGAA
JMSF020A20-           ATGCTGTTCAGTTTCGTCACCAATCTCTCCGCGCTATCTGTTACCGTCAACGATGTCGAA
                      ____________________________________________________________
consensus             ATGCTGTTCAGTTTCGTCACCAATCTCTCCGCGCTATCTGTTACCGTCAACGATGTCGAA
 
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JMFF031F13-           TGCGTGTACGAGTACGTTCTGTACGAAGGCGACACCATTTCCGGCAACTTCGTCGTTGTC
JMSF020A20-           TGCGTGTACGAGTACGTTCTGTACGAAGGCGACACCATTTCCGGCAACTTCGTCGTTGTC
rJMSF020A20+                                                                 TTGTC
                      ____________________________________________________________
consensus             TGCGTGTACGAGTACGTTCTGTACGAAGGCGACACCATTTCCGGCAACTTCGTCGTTGTC
 
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JMFF031F13-           GATCACGACATCTTCTGGAACTCGGATCACCCTGGCATTGATTTCACTGTGACATCACCT
JMSF020A20-           GATCACGACATCTTCTGGAACTCGGATCACCCTGGCATTGATTTCACTGTGACATCACCT
rJMSF020A20+          GATCACGACATCTTCTGGAACTCGGATCACCCTGGCATTGATTTCACTGTGACATCACCT
rJMFF031F13+                                               TTGATTTCACTGTGACATCACCT
                      ____________________________________________________________
consensus             GATCACGACATCTTCTGGAACTCGGATCACCCTGGCATTGATTTCACTGTGACATCACCT
 
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JMFF031F13-           GGAGACAATGTTGTCCACTCAATGAAGGGAACATCTGGTGACAAATTTGATTTTAAAGCC
JMSF020A20-           GGAGACAATGTTGTCCACTCAATGAAGGGAACATCTGGTGACAAATTTGATTTTAAAGCC
rJMSF020A20+          GGAGACAATGTTGTCCACTCAATGAAGGGAACATCTGGTGACAAATTTGATTTTAAAGCC
rJMFF031F13+          GGAGACAATGTTGTCCACTCAATGAAGGGAACATCTGGTGACAAATTTGATTTTAAAGCC
                      ____________________________________________________________
consensus             GGAGACAATGTTGTCCACTCAATGAAGGGAACATCTGGTGACAAATTTGATTTTAAAGCC
 
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JMFF031F13-           CCAAGAAGTGGGATGTACAAATTCTGTTTTCACAACCCATATTCAACACCAGAAACAGTC
JMSF020A20-           CCAAGAAGTGGGATGTACAAATTCTGTTTTCACAACCCATATTCAACACCAGAAACAGTC
rJMSF020A20+          CCAAGAAGTGGGATGTACAAATTCTGTTTTCACAACCCATATTCAACACCAGAAACAGTC
rJMFF031F13+          CCAAGAAGTGGGATGTACAAATTCTGTTTTCACAACCCATATTCAACACCAGAAACAGTC
                      ____________________________________________________________
consensus             CCAAGAAGTGGGATGTACAAATTCTGTTTTCACAACCCATATTCAACACCAGAAACAGTC
 
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JMFF031F13-           TCCTTCTACATACATGTTGGCCACATTCCTAATGAGCATAACCTTGCCAAGGATGAACAC
JMSF020A20-           TCCTTCTACATACATGTTGGCCACATTCCTAATGAGCATAACCTTGCCAAGGATGAACAC
rJMSF020A20+          TCCTTCTACATACATGTTGGCCACATTCCTAATGAGCATAACCTTGCCAAGGATGAACAC
rJMFF031F13+          TCCTTCTACATACATGTTGGCCACATTCCTAATGAGCATAACCTTGCCAAGGATGAACAC
                      ____________________________________________________________
consensus             TCCTTCTACATACATGTTGGCCACATTCCTAATGAGCATAACCTTGCCAAGGATGAACAC
 
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JMFF031F13-           TTGGATCCCATTAATGTTAAAATTGCTGAACTGAGGGAGGCATTGGAATCCGTTACATCT
JMSF020A20-           TTGGATCCCATTAATGTTAAAATTGCTGAACTGAGGGAGGCATTGGAATCCGTTACATCT
rJMSF020A20+          TTGGATCCCATTAATGTTAAAATTGCTGAACTGAGGGAGGCATTGGAATCCGTTACATCT
rJMFF031F13+          TTGGATCCCATTAATGTTAAAATTGCTGAACTGAGGGAGGCATTGGAATCCGTTACATCT
                      ____________________________________________________________
consensus             TTGGATCCCATTAATGTTAAAATTGCTGAACTGAGGGAGGCATTGGAATCCGTTACATCT
 
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JMFF031F13-           GAGCAGAAGTATTTGAA                                           
JMSF020A20-           GAGCAGAAGTATTTGAAGGCACGGGATGCCCGCCATCGTCATACAAATGAGAGCACAAGA
rJMSF020A20+          GAGCAGAAGTATTTGAAGGCACGGGATGCCCGCCATCGTCATACAAATGAGAGCACAAGA
rJMFF031F13+          GAGCAGAAGTATTTGAAGGCACGGGATGCCCGCCATCGTCATACAAATGAGAGCACAAGA
                      ____________________________________________________________
consensus             GAGCAGAAGTATTTGAAGGCACGGGATGCCCGCCATCGTCATACAAATGAGAGCACAAGA
 
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JMSF020A20-           AAGCGAGTCATTTTCTACACAGTTGGAGAGTATATTTTGCTTGCTCTTGCTAGTTCACTT
rJMSF020A20+          AAGCGAGTCATTTTCTACACAGTTGGAGAGTATATTTTGCTTGCTCTTGCTAGTTCACTT
rJMFF031F13+          AAGCGAGTCATTTTCTACACAGTTGGAGAGTATATTTTGCTTGCTCTTGCTAGTTCACTT
                      ____________________________________________________________
consensus             AAGCGAGTCATTTTCTACACAGTTGGAGAGTATATTTTGCTTGCTCTTGCTAGTTCACTT
 
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JMSF020A20-           CAAGTTGTTTACATCCGCCGCTTGTTCAGCAAGTCAGTAGCCTACAACCGGGTTTGACCA
rJMSF020A20+          CAAGTTGTTTACATCCGCCGCTTGTTCAGCAAGTCAGTAGCCTACAACCGGGTTTGACCA
rJMFF031F13+          CAAGTTGTTTACATCCGCCGCTTGTTCAGCAAGTCAGTAGCCTACAACCGGGTTTGACCA
                      ____________________________________________________________
consensus             CAAGTTGTTTACATCCGCCGCTTGTTCAGCAAGTCAGTAGCCTACAACCGGGTTTGACCA
 
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JMSF020A20-           AGTTGCATGCTTGTAGTTTCCTCATCCTTTTTACAGGAATTATATTGCTGTTTACTATCA
rJMSF020A20+          AGTTGCATGCTTGTAGTTTCCTCATCCTTTTTACAGGAATTATATTGCTGTTTACTATCA
rJMFF031F13+          AGTTGCATGCTTGTAGTTTCCTCATCCTTTTTACAGGAATTATATTGCTGTTTACTATCA
                      ____________________________________________________________
consensus             AGTTGCATGCTTGTAGTTTCCTCATCCTTTTTACAGGAATTATATTGCTGTTTACTATCA
 
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JMSF020A20-           CTGTCAGTTCATTTA                                             
rJMSF020A20+          CTGTCAGTTCATTTAGAGGAAAAAACAACACTTCCCTGAAACAAAAATAACATTATAATT
rJMFF031F13+          CTGTCAGTTCATTTAGAGGAAAAAACAACACTTCCCTGAAACAAAAATAACATTATAATT
                      ____________________________________________________________
consensus             CTGTCAGTTCATTTAGAGGAAAAAACAACACTTCCCTGAAACAAAAATAACATTATAATT
 
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rJMSF020A20+          ACTTGTTAAATTTATCATCAACATTTTAGGATTGTGCATTTGTGCGTGTAATGTCATCTT
rJMFF031F13+          ACTTGTTAAATTTATCATCAACATTTTAGGATTGTGCATTTGTGCATGTAATGTCATCTT
                      ____________________________________________________________
consensus             ACTTGTTAAATTTATCATCAACATTTTAGGATTGTGCATTTGTGCGTGTAATGTCATCTT
 
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rJMSF020A20+          CTGTTACTTAAGACTCACCTGCATGTAGTAGCAATTTGTGCCCCAGAAGGGGTGAT    
rJMFF031F13+          ATGTTACTTAAGACTCACCTGCATGTAGTAGCAATTTGTGCCCCAGAAGGGGTGATTAAG
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consensus             CTGTTACTTAAGACTCACCTGCATGTAGTAGCAATTTGTGCCCCAGAAGGGGTGATTAAG