Contig 011097:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C19Sequence507007411 (2)ref|XP_009625733.1|2e-21PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Nicotiana tom619011097 (2)ref|XP_004228528.1|1e-68PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Solanum lycop
JMSF038P13Sequence611010798 (4)ref|XP_009788112.1|285PREDICTED: uncharacterized protein LOC104235970 [Nicotiana sylvestris]810011097 (2)ref|XP_002266488.1|6e-44PREDICTED: proteasome subunit beta type-6 [Vitis vinifera] emb|CBI24056.3| unnam

Alignment

This contig is upended


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rJMSF038P13+                                                      TCATATCTTGACTACT
                      ____________________________________________________________
consensus                                                         TCATATCTTGACTACT
 
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rJMSF038P13+          GATTCTAGTCTCCGAAAAAGCAACAAGAGTTCATTCGTTAAGTCTATGCAGTGCTGAGCA
                      ____________________________________________________________
consensus             GATTCTAGTCTCCGAAAAAGCAACAAGAGTTCATTCGTTAAGTCTATGCAGTGCTGAGCA
 
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rJMSF038P13+          ACCGGCCTGGAGATGCAAGCAACTTTGTACAGGGAATTGGATCAGACTTCGGTTCGGATA
                      ____________________________________________________________
consensus             ACCGGCCTGGAGATGCAAGCAACTTTGTACAGGGAATTGGATCAGACTTCGGTTCGGATA
 
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rJMSF038P13+          CACAGCTTGTATACAAACACTATGCTACCTTATACTTTGTATTACTATTTGATAATTCTG
                      ____________________________________________________________
consensus             CACAGCTTGTATACAAACACTATGCTACCTTATACTTTGTATTACTATTTGATAATTCTG
 
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rJMSF038P13+          AGAATGAACTTGCTATGCTTGATCTAATACAAGAATATGCTTCAAACTGGGCTTATTGTT
                      ____________________________________________________________
consensus             AGAATGAACTTGCTATGCTTGATCTAATACAAGAATATGCTTCAAACTGGGCTTATTGTT
 
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rJMSF038P13+          GGTGGCTGGGACAAACATGAAGGAGGTAAAATATNTGGGATACCCCTTGGAGGCACAATA
                      ____________________________________________________________
consensus             GGTGGCTGGGACAAACATGAAGGAGGTAAAATATNTGGGATACCCCTTGGAGGCACAATA
 
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rJMSF038P13+          TTGGAGCAGCCTTTTGCTATTGGAGGATCAGGCTCTTCTTATTTATATGGTTTCTTTGAC
                      ____________________________________________________________
consensus             TTGGAGCAGCCTTTTGCTATTGGAGGATCAGGCTCTTCTTATTTATATGGTTTCTTTGAC
 
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rJMSF038P13+          CAAGCATGGAAGGAAGGAATGACCCAAGAAGAAGCTGAGAAATTTGTGGTTAAAGCAGTG
                      ____________________________________________________________
consensus             CAAGCATGGAAGGAAGGAATGACCCAAGAAGAAGCTGAGAAATTTGTGGTTAAAGCAGTG
 
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rJMSF038P13+          TCTCTTGCCATTGCGCGGGATGGTGCCAGTGGTGGCGTAGTTCGGACTGTTACTTGGCAA
rJMFF031C19+                                                                TGGCGA
                      ____________________________________________________________
consensus             TCTCTTGCCATTGCGCGGGATGGTGCCAGTGGTGGCGTAGTTCGGACTGTTACTTGGCGA
 
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rJMSF038P13+          AGATGCATACAAGAAAATACGAGTTGATGCTACACTTGTGCAACTCTACACAGCCTTTGC
rJMFF031C19+          AGATGCATACAAGAAAATACGAGCTGGTGCTACACTTGTGCAGCTCTACACAGCCCTTGC
                      ____________________________________________________________
consensus             AGATGCATACAAGAAAATACGAGTTGGTGCTACACTTGTGCAGCTCTACACAGCCTTTGC
 
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rJMSF038P13+          ATATGGGGGGCCTGCC                                            
rJMFF031C19+          ATATGGGGGGCCTGCCCTTATACCCAAGATAAAGGCCGAACTCACCCAATGTTTAGAAAG
                      ____________________________________________________________
consensus             ATATGGGGGGCCTGCCCTTATACCCAAGATAAAGGCCGAACTCACCCAATGTTTAGAAAG
 
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rJMFF031C19+          GGACGGTTATAAGACAATCCACGAGGCCGTTGGAGCAGATTGCCGATAGTCTGGAGCAAC
                      ____________________________________________________________
consensus             GGACGGTTATAAGACAATCCACGAGGCCGTTGGAGCAGATTGCCGATAGTCTGGAGCAAC
 
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rJMFF031C19+          AAGCAGTTGCTCTAGAGCTCTTGGAGCGACCTCGTTTATCCACATACAATAAAAATCTAG
                      ____________________________________________________________
consensus             AAGCAGTTGCTCTAGAGCTCTTGGAGCGACCTCGTTTATCCACATACAATAAAAATCTAG
 
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rJMFF031C19+          TTACTAATTGAAGAGAAAGGTTCTCCCTGGATTTTCTTGGCTGACATTTGTGATATTTTA
                      ____________________________________________________________
consensus             TTACTAATTGAAGAGAAAGGTTCTCCCTGGATTTTCTTGGCTGACATTTGTGATATTTTA
 
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rJMFF031C19+          ATGTATTCTTTTTGAATCTTATTCCCCTTTGTTTTGCCCCTCTGTGGGAGGGGTAGATTT
                      ____________________________________________________________
consensus             ATGTATTCTTTTTGAATCTTATTCCCCTTTGTTTTGCCCCTCTGTGGGAGGGGTAGATTT
 
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rJMFF031C19+          TGACATGTAACATCTTTCTTCTTCAGTGGCTAACATTTGGTCTAAGTTTACATAATCAAG
                      ____________________________________________________________
consensus             TGACATGTAACATCTTTCTTCTTCAGTGGCTAACATTTGGTCTAAGTTTACATAATCAAG