Contig 011088:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-                                      GTTGAATCCTTCTCTTGCCACTGGCATCTTCTC
                      ____________________________________________________________
consensus                                        GTTGAATCCTTCTCTTGCCACTGGCATCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           AAAATCTCCATTTTCTCTCAGCTCCTCCAATCTAGCTTCATCATCTTCTCTCTCTGCATC
rJMFF028L18+                                                             CTCTGCATC
                      ____________________________________________________________
consensus             AAAATCTCCATTTTCTCTCAGCTCCTCCAATCTAGCTTCATCATCTTCTCTCTCTGCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           TGCATATCCATTATATTCTCAGACAAAAAGATCAAAAGAAAAAGAAGAAGAAAATGGAGT
rJMFF028L18+          TGCATATCCATTATATTNTCAGACAAAAAGATCAAAAGAAAAAGAAGAAGAAAATGGAGT
                      ____________________________________________________________
consensus             TGCATATCCATTATATTCTCAGACAAAAAGATCAAAAGAAAAAGAAGAAGAAAATGGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           CAAGAACAGCTTTGTATTATACTGGGTGTGAAGAACACCAGTATCAACCCCATTTTCTTG
rJMFF028L18+          CAAGAACAGCTTTGTATTATACTGGGTGTGAAGAACACCAGTATCAACCCCATTTTCTTG
                      ____________________________________________________________
consensus             CAAGAACAGCTTTGTATTATACTGGGTGTGAAGAACACCAGTATCAACCCCATTTTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           ATGCTTGCTTCCTGTGCCAGAGATCTTTGGGTCCTAACAGTGACATCTTCATGTACAGAG
rJMFF028L18+          ATGCTTGCTTCCTGTGCCAGAGATCTTTGGGTCCTAACAGTGACATCTTCATGTACAGAG
                      ____________________________________________________________
consensus             ATGCTTGCTTCCTGTGCCAGAGATCTTTGGGTCCTAACAGTGACATCTTCATGTACAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           GGAATACACCATTTTGCAGCCAAGAATGCAGGCAAGAACAGATAGAGATGGATGAGGCTA
rJMFF028L18+          GGAATACACCATTTTGCAGCCAAGAATGCAGGCAAGAACAGATAGAGATGGATGAGGCTA
                      ____________________________________________________________
consensus             GGAATACACCATTTTGCAGCCAAGAATGCAGGCAAGAACAGATAGAGATGGATGAGGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           ATGAGCAAAGACTGAAGCTTTCATCTTCATCTTCTTCAAGATCTTCTTCTTCTTCAAAGG
rJMFF028L18+          ATGAGCAAAGACTGAAGCTTTCATCTTCATCTTCTTCAAGATCTTCTTCTTCTTCAAAGG
                      ____________________________________________________________
consensus             ATGAGCAAAGACTGAAGCTTTCATCTTCATCTTCTTCAAGATCTTCTTCTTCTTCAAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           GATCATCAAAAACACAAAGACAGACAGCAACCCAGGAATCCACAACCCAGGAAACTGACA
rJMFF028L18+          GATCATCAAAAACACAAAGACAGACAGCAACCCAGGAATCCACAACCCAGGAAACTGACA
                      ____________________________________________________________
consensus             GATCATCAAAAACACAAAGACAGACAGCAACCCAGGAATCCACAACCCAGGAAACTGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF028L18-           CCAAGAAAGCTGTA                                              
rJMFF028L18+          CCAAGAAAGCTGTAAGAACAGGCACAGTGGCTGTGGCTTAATCACACTACAGATCAGAGC
                      ____________________________________________________________
consensus             CCAAGAAAGCTGTAAGAACAGGCACAGTGGCTGTGGCTTAATCACACTACAGATCAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028L18+          TCTCAAGTATAAATTATCTGTAAATAATACTGGTGGATATCAGATGGAGAGAGAGAGAGA
                      ____________________________________________________________
consensus             TCTCAAGTATAAATTATCTGTAAATAATACTGGTGGATATCAGATGGAGAGAGAGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028L18+          GATCCATCAGACAATTTTGAATCTTTTTTGTTTTTTGTTTCTGGGTATTTTATTGACATT
                      ____________________________________________________________
consensus             GATCCATCAGACAATTTTGAATCTTTTTTGTTTTTTGTTTCTGGGTATTTTATTGACATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028L18+          CTCCTCTTCAGATGTTGCTGAGATCTATGTTTATACATAAATTGAGATCCCAAGAAATGG
                      ____________________________________________________________
consensus             CTCCTCTTCAGATGTTGCTGAGATCTATGTTTATACATAAATTGAGATCCCAAGAAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028L18+          GATGTTCTTGCCTTCTTGGAATTTGCAATCTTTAATGATGTTTGTATACAATATGCAAAT
                      ____________________________________________________________
consensus             GATGTTCTTGCCTTCTTGGAATTTGCAATCTTTAATGATGTTTGTATACAATATGCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF028L18+          CTGAGGCTGATGAACATGTTCATAGTTACATCTTTCTGAGATAAAAGGTAGAAAGAGAAA
                      ____________________________________________________________
consensus             CTGAGGCTGATGAACATGTTCATAGTTACATCTTTCTGAGATAAAAGGTAGAAAGAGAAA