Contig 011086:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K23Sequence616006047 (7)ref|XP_009605315.1|9e-112PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]523011086 (5)ref|XP_009783888.1|1e-26PREDICTED: protein transport protein SEC24 [Nicotiana sylvestris]
JMFF008P07Sequence618006047 (7)ref|XP_009605315.1|2e-112PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]251011086 (5)
JMFF010M19Sequence521006047 (7)ref|XP_009605315.1|2e-93PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]704011086 (5)ref|XP_008360906.1|239PREDICTED: uncharacterized protein LOC103424589 [Malus domestica]
JMFF028I23Sequence500006047 (7)ref|XP_009605315.1|1e-85PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]705011086 (5)gb|KDO58106.1|3e-64hypothetical protein CISIN_1g0053622mg, partial [Citrus sinensis]
JMFF039C21Sequence307006047 (7)ref|XP_009605315.1|5e-55PREDICTED: protein transport protein Sec24B [Nicotiana tomentosiformis]572011086 (5)gb|KDO58106.1|2e-41hypothetical protein CISIN_1g0053622mg, partial [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF010M19+ TCACCTTGCTATATATCCAATGCTAACTT
                      ____________________________________________________________
consensus TCACCTTGCTATATATCCAATGCTAACTT
 
. : . : . : . : . : . :
rJMFF010M19+ CATATGCATCACCGGACAAACAAGCTTATCCCCGCCATTCCTTGAGCCGTGCTGCATTGA
rJMFF028I23+ CCCCGCCATTCCTTGAGCCGTGCTGCATTGA
                      ____________________________________________________________
consensus CATATGCATCACCGGACAAACAAGCTTATCCCCGCCATTCCTTGAGCCGTGCTGCATTGA
 
. : . : . : . : . : . :
rJMFF010M19+ TAACAAGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATT
rJMFF028I23+ TAACAAGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATT
                      ____________________________________________________________
consensus TAACAAGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATT
 
. : . : . : . : . : . :
rJMFF010M19+ CTTCTACAACTGGCCCTTCGCTTCCCTTTCCTCCACCTCAGGACTGTTTGTTGAGAACAA
rJMFF039C21+ ACTGACCCTTCGCTTCCCTTTCCTCCACCTCAGGACTGTTTGTTGAGAACAA
rJMFF007K23+ AA
rJMFF028I23+ CTTCTACAACTGACCCTTCGCTTCCCTTTCCTCCACCTCAGGACTGTTTGTTGAGAACAA
                      ____________________________________________________________
consensus CTTCTACAACTGACCCTTCGCTTCCCTTTCCTCCACCTCAGGACTGTTTGTTGAGAACAA
 
. : . : . : . : . : . :
rJMFF010M19+ CTATAAACAAGCTGAAGCAAGAGCGATGCATCTCCCCGAAACTGATGTTTATCCGAGCAG
rJMFF039C21+ CTATAAACAAGCTGAAGCAAGAGCGATGCATCTCCCCGAAACTGATGTTTATCCGAGCAG
rJMFF007K23+ CTATAANCAAGCTGAAGCAAGAGCGATGCATCTCCCCGAAACTGATGTTTATCCGAGCAG
rJMFF028I23+ CTATAAACAAGCTGAAGCAAGAGCGATGCATCTCCCCGAAACTGATGTTTATCCGAGCAG
                      ____________________________________________________________
consensus CTATAAACAAGCTGAAGCAAGAGCGATGCATCTCCCCGAAACTGATGTTTATCCGAGCAG
 
. : . : . : . : . : . :
rJMFF010M19+ GGCAGGATGATGCAACGCCATTCGAGAATTTTCTGATAGAGGAACAAGACGTAGAAGGGA
rJMFF039C21+ GGCAGGATGATGCAACGCCATTCGAGAATTTTCTGATAGAGGAACAAGACGTAGAAGGGA
rJMFF007K23+ GGCAGGATGATGCAACGCCATTCGAGAATTTTNTGATAGAGGAACAAGACGTAGAAGGGA
rJMFF028I23+ GGCAGGATGATGCAACGCCATTCGAGAATTTTCTGATAGAGGAACAAGACGTAGAAGGGA
                      ____________________________________________________________
consensus GGCAGGATGATGCAACGCCATTCGAGAATTTTCTGATAGAGGAACAAGACGTAGAAGGGA
 
. : . : . : . : . : . :
rJMFF010M19+ ACGGGTTCACAAGTATCATGGGCTTCGTATCCTTCCTGGAAGAGATCCATCAGAGTGTGC
rJMFF039C21+ ACGGGTTCACAAGTATCATGGGCTTCGTATCCTTCCTGGAAGAGATCCATCAGAGTGTGC
rJMFF007K23+ ACGGGTTCACAAGTATCATGGGCTTCGTATCCTTCCTGGAAGAGATCCATCAGAGTGTGC
rJMFF028I23+ ACGGGTTCACAAGTATCATGGGCTTCGTATCCTTCCTGGAAGAGATCCATCAGAGTGTGC
                      ____________________________________________________________
consensus ACGGGTTCACAAGTATCATGGGCTTCGTATCCTTCCTGGAAGAGATCCATCAGAGTGTGC
 
. : . : . : . : . : . :
rJMFF010M19+ TGGAGTACATGAAATAAGTTACTTTTTGCAACCATAAATTGTTACTAGAGGTGGAAAAAG
rJMFF008P07+ CCATAAANTGTTANTAGAGGTGGAAAAAG
rJMFF039C21+ TGGAGTACATGAAATAAGTTACTTTTTGCAACCATAAATTGTTACTAGAGGTGGAAAAAG
rJMFF007K23+ TGGAGTACATGAAATAAGTTACTTTTTGCAACCATAAATTGTTACTAGAGGTGGAAAAAG
rJMFF028I23+ TGGAGTACATGAAATAAGTTACTTTTTGCAACCATAAATTGTTACTAGAGGTGGAAAAAG
                      ____________________________________________________________
consensus TGGAGTACATGAAATAAGTTACTTTTTGCAACCATAAATTGTTACTAGAGGTGGAAAAAG
 
. : . : . : . : . : . :
rJMFF010M19+ GAAGTAGTTGGGATTTTCTGCATTTGGTTGGTGACTGGTGAGTGCAAATTAGCTAGCTTC
rJMFF008P07+ GAAGTAGTNGGGATTTTCTGCATTTGGTTGGTGACTGGTGAGTGC-AATTAGCTAGCTTC
rJMFF039C21+ GAAGTAGTTGGGATTTTCTGCATTTGGTTGGTGACTGGTGAGTGCAAATTAGCTAGCTTC
rJMFF007K23+ GAAGTAGTTGGGATTTTCTGCATTTGGTTGGTGACTGGTGAGTGCAAATTAGCTAGCTTC
rJMFF028I23+ GAAGTAGTTGGGATTTTCTGCATTTGGTTGGTGACTGGTGAGTGCAAATTAGCTAGCTTC
                      ____________________________________________________________
consensus GAAGTAGTTGGGATTTTCTGCATTTGGTTGGTGACTGGTGAGTGCAAATTAGCTAGCTTC
 
. : . : . : . : . : . :
rJMFF010M19+ AGTGCTTCATACAGACCAAGACAAGTGAACAGCAGAATCTCTTAATAGTTATTGGAAATT
rJMFF008P07+ AGTGCTTCATACAGACCAAGACAAGTGAACAGCAGAATCTCTTAATAGTTATTGGAAATT
rJMFF039C21+ AGTGCTTCATACAGACCAAGACAAGTGAACAGCAGAATCTCTTAATAGTTATTGGAAATT
rJMFF007K23+ AGTGCTTCATACAGACCAAGACAAGTGAACAGCAGAATCTNTTAATAGTTATTGGAAATT
rJMFF028I23+ AGTGCTTCATACAGACCAAGACAAGTGAACAGCAGAATCTCTTAATAGTTATTGGAAATT
                      ____________________________________________________________
consensus AGTGCTTCATACAGACCAAGACAAGTGAACAGCAGAATCTCTTAATAGTTATTGGAAATT
 
. : . : . : . : . : . :
rJMFF010M19+ GCAAATTCTCTTTTCCTGATAGTGTCCATACTTCTTCGACATTGTGTTGCTTCGTGAACA
rJMFF008P07+ GCAAATTCTCTTTTCCTGATAGTGTCCATACTTCTTCGACATTGTGTTGCTTCGTGAACA
rJMFF039C21+ GCAAATTCTCTTTTCCTGATAGTGTCCATACTTCTTCGACATTGTGTTGCTTCGTGAACA
rJMFF007K23+ GCAAATTCTCTTTTCCTGATAGTGTCCATACTTCTTCGACATTGTGTTGCTTCGTGAACA
rJMFF028I23+ GCAAATTCTCTTTTCCTGATAGTGTCCATACTTCTTCGACATTGTGTTGCTTCGTGAACA
                      ____________________________________________________________
consensus GCAAATTCTCTTTTCCTGATAGTGTCCATACTTCTTCGACATTGTGTTGCTTCGTGAACA
 
. : . : . : . : . : . :
rJMFF010M19+ TCACCAATTCACCATGGGGAACTGTTTTTTCAATAACAAAATTTGCAATGTAATACCTTA
rJMFF008P07+ TCACCAATTCACCATGGGGAACTGTTTTTTCAATAACAAAA
rJMFF039C21+ TCACCAATTCACCATGGGGAACTGTTTTTTCAATAACAAAATTTGCAATGTAATACCTTA
rJMFF007K23+ TCACCAATTCACCATGGGGAACTGTTTTTTCAATAACAAAATTTGCAATGTAATACCTNA
rJMFF028I23+ TCACCAATTCACCATGGGGAACTGTTTTTTCAATAACAAAATTTGCAATGTAATACCTTA
                      ____________________________________________________________
consensus TCACCAATTCACCATGGGGAACTGTTTTTTCAATAACAAAATTTGCAATGTAATACCTTA
 
. : . : . : . : . : . :
rJMFF010M19+ TACCTAGCAGCTT
rJMFF039C21+ TACCTAGCAGCTTTTTGTACTATAAGCTTTTGTTTTCTT
rJMFF007K23+ TACCTAGCAGCTTNTTGTACTATAAGCTTNTGTTTTCTT
rJMFF028I23+ TACCTAGCAGCTTTTTGTACTATAAGCTTTTGTTTTCTTTTCCTGGAGAGTTAATTCCAA
                      ____________________________________________________________
consensus TACCTAGCAGCTTTTTGTACTATAAGCTTTTGTTTTCTTTTCCTGGAGAGTTAATTCCAA