Contig 011081:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027M02Sequence689011081 (3)ref|XP_006340344.1|2e-85PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Solanum tubero
JMFS044B08Sequence551011081 (3)emb|CDP09735.1|4e-49unnamed protein product [Coffea canephora]
JMFS044C01Sequence553011081 (3)emb|CDP09735.1|7e-48unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS044C01+                                                                    CTA
JMFS044B08+                                                                      A
                      ____________________________________________________________
consensus                                                                      CTA
 
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JMFS044C01+           AGGCAAAAGGCATTCATGCATATAACCAGAATGTGGGAAAGGGAAACAATGACAGAATCT
JMFS044B08+           AGGGAAAAGGCATTCATGCATATAACCAGAATGTGGGAAAGGGAAACAATGACAGAATCT
rJMFF027M02-                                         TGTGGGAAAGGGAAACAATGACAGAATCT
                      ____________________________________________________________
consensus             AGGGAAAAGGCATTCATGCATATAACCAGAATGTGGGAAAGGGAAACAATGACAGAATCT
 
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JMFS044C01+           TAACAATGTGATGAATGTAGTACCTACATGATTAGCTATGAGCAAATGAAATTTACTGCT
JMFS044B08+           TAACAATGTGATGAATGTAGTACCTACATGATTAGCTATGAGCAAATGAAATTTACTGCT
rJMFF027M02-          TAACAATGTGATGAATGTAGTACCTACATGATTAGCTATGAGCAAATGAAATTTACTGCT
                      ____________________________________________________________
consensus             TAACAATGTGATGAATGTAGTACCTACATGATTAGCTATGAGCAAATGAAATTTACTGCT
 
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JMFS044C01+           TAGAAATAGTCAGGAATCGCCCGATCCTAAGCCTTGAGCTTCCCGCTTACCCTACGCTTG
JMFS044B08+           TAGAAATAGTCAGGAATCGCCCGATCCTAAGCCTTGAGCTTCCCGCTTACCCTACGCTTG
rJMFF027M02-          TAGAAATAGTCAGGAATCGCCCGATCCTAAGCCTTGAGCTTCCCGCTTACCCTACGCTTG
                      ____________________________________________________________
consensus             TAGAAATAGTCAGGAATCGCCCGATCCTAAGCCTTGAGCTTCCCGCTTACCCTACGCTTG
 
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JMFS044C01+           TTCTGCCAGCTATTCCTATCGCCATTGATTTGGTTCTTCTTTGCTGCAACCGAGCACTGA
JMFS044B08+           TTCTGCCAGCTATTCCTATCGCCATTGATTTGGTTCTTCTTTGCTGCAACCGAGCACTGA
rJMFF027M02-          TTCTGCCAGCTATTCCTATCGCCATTGATTTGGTTCTTCTTTGCTGCAACCGAGCACTGA
                      ____________________________________________________________
consensus             TTCTGCCAGCTATTCCTATCGCCATTGATTTGGTTCTTCTTTGCTGCAACCGAGCACTGA
 
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JMFS044C01+           TCACTCCGGGTGCCTTTGCTATTCATGTTGGACTGAAGCTTACGCCTCCTCATCCTGTTT
JMFS044B08+           TCACTCCGGGTGCCTTTGCTATTCATGTTGGACTGAAGCTTACGCCTCCTCATCCTGTTT
rJMFF027M02-          TCACTCCGGGTGCCTTTGCTATTCATGTTGGACTGAAGCTTACGCCTCCTCATCCTGTTT
                      ____________________________________________________________
consensus             TCACTCCGGGTGCCTTTGCTATTCATGTTGGACTGAAGCTTACGCCTCCTCATCCTGTTT
 
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JMFS044C01+           TCTAACCTTAAACCTCGTAAAGCACGGACCCTCTGCTCTATCTCCAACGCTTGTGAGAAG
JMFS044B08+           TCTAACCTTAAACCTCGTAAAGCACGGACCCTCTGCTCTATCTCCAACGCTTGTGAGAAG
rJMFF027M02-          TCTAACCTTAAACCTCGTAAAGCACGGACCCTCTGCTCTATCTCCAACGCTTGTGAGAAG
                      ____________________________________________________________
consensus             TCTAACCTTAAACCTCGTAAAGCACGGACCCTCTGCTCTATCTCCAACGCTTGTGAGAAG
 
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JMFS044C01+           TTCCAGATCCTAACAGCGCCTTATTCACCTCCACACACAATACGATCCAGACCAACATCC
JMFS044B08+           TTCCAGATCCTAACAGCGCCTTCTTCACCTCCACACACAATACGATCCAGACCAACATCC
rJMFF027M02-          TTCCAGATCCTAACAGCGCCTTCTTCACCTCCACACACAATACGATCCAGACCAACATCC
                      ____________________________________________________________
consensus             TTCCAGATCCTAACAGCGCCTTCTTCACCTCCACACACAATACGATCCAGACCAACATCC
 
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JMFS044C01+           ACTGCAAATAAATTGGACCCAAATCCATGAAGCATTCGTTGCGGAGGCTCAACACTTGTA
JMFS044B08+           ACTGCAAATAAATTGGACCCAAATCCATGAAGCATTCGTTGCGGAGGCTCAACACTTGTA
rJMFF027M02-          ACTGCAAATAAATTGGACCCAAATCCATGAAGCATTCGTTGCGGAGGCTCAACACTTGTA
                      ____________________________________________________________
consensus             ACTGCAAATAAATTGGACCCAAATCCATGAAGCATTCGTTGCGGAGGCTCAACACTTGTA
 
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JMFS044C01+           TGGTCCAGATTGTCAACCTTACAAGGACGGCTTCCTGTTGCTGAATACCTACTTGTCTTC
JMFS044B08+           TGGTCCAGATTGTCAACCTTACAAGGACGGCTTCCTGTTGCTGAATACCTACTTGTCTTC
rJMFF027M02-          TGGTCCAGATTGTCAACCTTACAAGGACGGCTTCCTGTTGCTGAATACCTACTTGTCTTC
                      ____________________________________________________________
consensus             TGGTCCAGATTGTCAACCTTACAAGGACGGCTTCCTGTTGCTGAATACCTACTTGTCTTC
 
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JMFS044C01+           AATAACTTCC                                                  
JMFS044B08+           AATAACTTCC                                                  
rJMFF027M02-          AATAACTTCCTCACATCGATAAGTGCCAGTTTTCCATCGCTTGAAGCGGAAACAAGCCAG
                      ____________________________________________________________
consensus             AATAACTTCCTCACATCGATAAGTGCCAGTTTTCCATCGCTTGAAGCGGAAACAAGCCAG
 
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rJMFF027M02-          GGGAATTCAAATGCAAGAGAATAAACAGGGCCCGAGTGAGGAATCCATGTTGCAACCTTC
                      ____________________________________________________________
consensus             GGGAATTCAAATGCAAGAGAATAAACAGGGCCCGAGTGAGGAATCCATGTTGCAACCTTC
 
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rJMFF027M02-          TTTACATGAAACCTTGCGTTTTTTACAACCTCAAACATGTGTATGGCTCCGTCTTCTCCT
                      ____________________________________________________________
consensus             TTTACATGAAACCTTGCGTTTTTTACAACCTCAAACATGTGTATGGCTCCGTCTTCTCCT