Contig 011079:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027D14Sequence301008999 (14)680011079 (4)emb|CDP16075.1|3e-67unnamed protein product [Coffea canephora]
JMSF007E02Sequence284008999 (14)780011079 (4)emb|CDP16075.1|2e-100unnamed protein product [Coffea canephora]
JMSF023M18Sequence298008999 (14)609011079 (4)emb|CDP16075.1|1e-62unnamed protein product [Coffea canephora]
JMSF023O24Sequence626008999 (14)gb|ABN10955.2|8e-09auxin response factor 8 [Ipomoea nil]740011079 (4)ref|XP_009602214.1|8e-92PREDICTED: auxin response factor 6-like isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF007E02+                                       ATACAGACTCGTCAATTTTACTGCAGAATGG
                      ____________________________________________________________
consensus                                          ATACAGACTCGTCAATTTTACTGCAGAATGG
 
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rJMSF007E02+          GATTTCAAACCTCAAAAATAGTGGTGGTGAGAATGGGTTTTTGAATATGCCATTCTCAAC
                      ____________________________________________________________
consensus             GATTTCAAACCTCAAAAATAGTGGTGGTGAGAATGGGTTTTTGAATATGCCATTCTCAAC
 
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rJMSF007E02+          CTGTAATTTCACTAGTGGTGTTGGCACGGATTATCCCCTCAACCCAGATATGGGAACTTC
                      ____________________________________________________________
consensus             CTGTAATTTCACTAGTGGTGTTGGCACGGATTATCCCCTCAACCCAGATATGGGAACTTC
 
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rJMSF007E02+          TAGTTGTGTGGATGAATCAGGTTTCTTGCAGTCCTCAGAAAATGTGGACCAAGCAAACCC
rJMSF023M18+                                            TCAGAAAATGTGGACCAAGCAAACCC
rJMSF023O24+                                                                AAACCC
rJMFF027D14+                                                                AAACCC
                      ____________________________________________________________
consensus             TAGTTGTGTGGATGAATCAGGTTTCTTGCAGTCCTCAGAAAATGTGGACCAAGCAAACCC
 
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rJMSF007E02+          ACCTAACAGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTTGGACGTTCACTTGATAT
rJMSF023M18+          ACCTAACAGAACCTTTGTGAAGGTTCACNAGTCAGGGTCCTNTGGACGTTCACCTGATAT
rJMSF023O24+          ACCTAACAGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTTGGACGTTCACTTGATAT
rJMFF027D14+          ACCTAACAGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTTGGACGTTCACTTGATAT
                      ____________________________________________________________
consensus             ACCTAACAGAACCTTTGTGAAGGTTCACAAGTCAGGGTCCTTTGGACGTTCACTTGATAT
 
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rJMSF007E02+          CTCCAAGTTTAGCAGCTATCATGAGCTGCGAAGTGAGCTTGCTCGCATGTTTGGCCTTGA
rJMSF023M18+          CTCCAAGTTTAGCAGCTATCATGAGCTGCGAAGTGAGCTTGCTCGCATGTTTGGCCTTGA
rJMSF023O24+          CTCCAAGTTTAGCAGCTATCATGAGCTGCGAAGTGAGCTTGCTCGCATGTTTGGCCTTGA
rJMFF027D14+          CTCCAAGTTTAGCAGCTATCATGAGCTGCGAAGTGAGCTTGCTCGCATGTTTGGCCTTGA
                      ____________________________________________________________
consensus             CTCCAAGTTTAGCAGCTATCATGAGCTGCGAAGTGAGCTTGCTCGCATGTTTGGCCTTGA
 
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rJMSF007E02+          AGGCCTGTTGGAGGACCCTGAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAA
rJMSF023M18+          AGGCCTGTTGGAGGACCCTGNGAGNTCAGGNTGGCAGCTTGTNTTTGTTGACCGAGAGAA
rJMSF023O24+          AGGCCTGTTGGAGGACCCTGAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAA
rJMFF027D14+          AGGCCTGTTGGAGGACCCTGAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAA
                      ____________________________________________________________
consensus             AGGCCTGTTGGAGGACCCTGAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAA
 
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rJMSF007E02+          TGATGTACTTCTCCTCGGCGATGACCCTTGGCAGGAGTTTGTGAACAATGTTTGGTATAT
rJMSF023M18+          TGATNTANTTCTCCTCGGCGATGACCCTNGGCAGGAGNTTGTGANCAATGTTTGGTATAT
rJMSF023O24+          TGATGTACTTCTCCTCGGCGATGACCCTTGGCAGGAGTTTGTGAACAATGTTTGGTATAT
rJMFF027D14+          TGATGTACTTCTCCTCGGCGATGACCCTTGGCAGGAGTTTGTGAACAATGTTTGGTATAT
                      ____________________________________________________________
consensus             TGATGTACTTCTCCTCGGCGATGACCCTTGGCAGGAGTTTGTGAACAATGTTTGGTATAT
 
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rJMSF007E02+          CAAAATACTGTCTCCATTTGAAGTGCACCAGATGGGGAAAGAAGAAGGCATCGATCTTCC
rJMSF023M18+          CAAANTACTGTNTCCATTTGAAGTGCACCAGATGGGGAAAGAAGANGGCATCGATCTTCC
rJMSF023O24+          CAAAATACTGTCTCCATTTGAAGTGCACCAGATGGGGAAAGAAGAAGGCATCGATCTTCC
rJMFF027D14+          C--AATACTGTCTCCATTTGAAGTGCACCAGATGGGGAAAGAAGAAGGCATCGATCTTCC
                      ____________________________________________________________
consensus             CAAAATACTGTCTCCATTTGAAGTGCACCAGATGGGGAAAGAAGAAGGCATCGATCTTCC
 
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rJMSF007E02+          AAACAATCTCCCTGCTGCAAATCAGAGGCTCCCAAATGGTGGCAGTAGCTGTGAAGTTCA
rJMSF023M18+          AAACAATCTCCCTGCTGCAAATCAGAGGCTCCCAAATGGTGGCAGTAGCTGTGAAGTTCA
rJMSF023O24+          AAACAATCTCCCTGCTGCAAATCAGAGGCTCCCAAATGGTGGCAGTAGCTGTGAAGTTCA
rJMFF027D14+          AAACAATCTCCCTGCTGCAAATCAGAGGCTCCCAAATGGTGGCAGTAGCTGTGAAGTTCA
                      ____________________________________________________________
consensus             AAACAATCTCCCTGCTGCAAATCAGAGGCTCCCAAATGGTGGCAGTAGCTGTGAAGTTCA
 
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rJMSF007E02+          TGTGAGCCAGAAAGAGACTAGAAATATGAATGGAATACCATTGGGGTCTCTTGACTACTA
rJMSF023M18+          TGTGAGCCAGAAAGAGACTAGAAATANGAATGGAATACCATTGGGGTCTCTTGACTACTA
rJMSF023O24+          TGTGAGCCAGAAAGAGACTAGAAATATGAATGGAATACCATTGGGGTCTCTTGACTACTA
rJMFF027D14+          TGTGAGCCAGAAAGAGACTAGAAATATGAATGGAATACCATTGGGGTCTCTTGACTACTA
                      ____________________________________________________________
consensus             TGTGAGCCAGAAAGAGACTAGAAATATGAATGGAATACCATTGGGGTCTCTTGACTACTA
 
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rJMSF007E02+          ATAAGGAAGACTTAAAATAGTAATGGATCTTCCCAAGGCAACTGTACCATATTAGAACT-
rJMSF023M18+          ATAAGGAAGACTTAAAATAGTAATGGATCTTCCCAAGGCAACTGTACCATATTAGAACCT
rJMSF023O24+          ATAAGGAAGACTTAAAATAGTAATGGATCTTCCCAAGGCAACTGTACCATATTAGAACT-
rJMFF027D14+          ATAAGGAAGACTTAAAATAGTAATGGATCTTCCCAAGGCAACTGTACCATATTAGAACT-
                      ____________________________________________________________
consensus             ATAAGGAAGACTTAAAATAGTAATGGATCTTCCCAAGGCAACTGTACCATATTAGAACT-
 
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rJMSF007E02+          -GTTGTATTCCCTCCCAGGTAAGGTAATCAGATTGTAAATTATAATAATGATTAAATTCG
rJMSF023M18+          GTCTGTATTCCCTCCCAGGTAAGGTAATCAGATTGTAAATTATAAT-ATGATTNAATTCG
rJMSF023O24+          -GTTGTATTCCCTCCCAGGTAAGGTAATCAGATTGTAAATTATAAT-ATGATTAAATTCG
rJMFF027D14+          -GTTGTATTCCCTCCCAGGTAAGGTAATCAGATTGTAAATTATAAT-ATGATTAAATTCG
                      ____________________________________________________________
consensus             -GTTGTATTCCCTCCCAGGTAAGGTAATCAGATTGTAAATTATAAT-ATGATTAAATTCG
 
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rJMSF007E02+          TATTCAACTACTACTACTACTACTACTACTA                             
rJMSF023M18+          TATTCAACTACTACTACTACTACTACTACTACCNTCCTAAATGA                
rJMSF023O24+          TATTCAACTACTACTACTACTACTACTACTACCTTCCTAAATGA                
rJMFF027D14+          TATTCAACTACTACTACTACTACTACTACTACCTTCCTAAATGATGATTTCTGAGAGTAA
                      ____________________________________________________________
consensus             TATTCAACTACTACTACTACTACTACTACTACCTTCCTAAATGATGATTTCTGAGAGTAA