Contig 011076:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026A12Sequence538012891 (2)ref|XP_010094353.1|3e-06GPN-loop GTPase 2 [Morus notabilis] gb|EXB55841.1| GPN-loop GTPase 2 [Morus nota732011076 (3)ref|XP_011099332.1|1e-92PREDICTED: GPN-loop GTPase 2 isoform X1 [Sesamum indicum]
JMSF020K02Sequence317011076 (3)ref|XP_007018483.1|1e-48P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor
JMSF021K02Sequence260011076 (3)ref|XP_009777327.1|2e-31PREDICTED: GPN-loop GTPase 2 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF020K02+                                                          TCATTCAAATGC
rJMFF026A12+                                                         TTCATTCAAATGC
                      ____________________________________________________________
consensus                                                            TTCATTCAAATGC
 
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rJMSF021K02+                                                           GCAGTGCATNT
rJMSF020K02+          CAAAGCCGTGATCATGAAACTCATTAAGAAATTGAATCTCATGTNGACTGCAGTGCATTT
rJMFF026A12+          CAAAGCCGTGATCATGAAACTCATTAAGAAATTGAATCTCATGTTGACTGCAGTGCATTT
                      ____________________________________________________________
consensus             CAAAGCCGTGATCATGAAACTCATTAAGAAATTGAATCTCATGTTGACTGCAGTGCATTT
 
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rJMSF021K02+          AGANGATGCACATNTANGTAGTGATCCTGGAAAGTATGTGAGTGCATTGCTTTTGTCATT
rJMSF020K02+          AGTTGATGCACATCTATGTAGTGATCCTGGAAAGTATGTGAGTGCATTGCTTTTGTCATT
rJMFF026A12+          AGTTGATGCACATCTATGTAGTGATCCTGGAAAGTATGTGAGTGCATTGCTTTTGTCATT
                      ____________________________________________________________
consensus             AGTTGATGCACATCTATGTAGTGATCCTGGAAAGTATGTGAGTGCATTGCTTTTGTCATT
 
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rJMSF021K02+          ATCAAACATGNTACATTNGGANTTACCCCATGTCAATGTTCTGTCCAAGATTGATCTTAT
rJMSF020K02+          ATCAACCATGCTACATTTGGAATTACCCCATGTCAATGTTCTGTCCAAGATTGATCTTAT
rJMFF026A12+          ATCAACCATGCTACATTTGGAATTACCCCATGTCAATGTTCTGTCCAAGATTGATCTTAT
                      ____________________________________________________________
consensus             ATCAACCATGCTACATTTGGAATTACCCCATGTCAATGTTCTGTCCAAGATTGATCTTAT
 
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rJMSF021K02+          TGAAAGNTACGGAAAGCTAGCTTTTAATCTGGACTTCTATACAGATGTACAAGATTTATC
rJMSF020K02+          TGAAAGTTACGGAAAGCTAGCTTTTAATCTGGACTTCTATACAGATGTACAAGATTTATC
rJMFF026A12+          TGAAAGTTACGGAAAGCTAGCTTTTAATCTGGACTTCTATACAGATGTACAAGATTTATC
                      ____________________________________________________________
consensus             TGAAAGTTACGGAAAGCTAGCTTTTAATCTGGACTTCTATACAGATGTACAAGATTTATC
 
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rJMSF021K02+          TTACTTGCAGTATCATCAGNGATCAGGATCCACGGTCTTCTAAGTACAGAAAGCTTACAA
rJMSF020K02+          TTACTTGCAGTATCATC-TTGATCAGGATCCACGGTCTTCTAAGTACAGAAAGCTTACAA
rJMFF026A12+          TTACTTGCAGTATCATC-TTGATCAGGATCCACGGTCTTCTAAGTACAGAAAGCTTACAA
                      ____________________________________________________________
consensus             TTACTTGCAGTATCATC-TTGATCAGGATCCACGGTCTTCTAAGTACAGAAAGCTTACAA
 
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rJMSF021K02+          AGGAGC                                                      
rJMSF020K02+          AGGAGC                                                      
rJMFF026A12+          AGGAGCTCTGCGAGGTGGTAGAAAATTTTGGACTTGTGAATTTCACAACATTGGATATTC
                      ____________________________________________________________
consensus             AGGAGCTCTGCGAGGTGGTAGAAAATTTTGGACTTGTGAATTTCACAACATTGGATATTC
 
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rJMFF026A12+          AGGATAAGGAGAGCGTTGGAAATCTCGTCAAATTGATTGACAAGAGCAACGGGTACATCT
                      ____________________________________________________________
consensus             AGGATAAGGAGAGCGTTGGAAATCTCGTCAAATTGATTGACAAGAGCAACGGGTACATCT
 
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rJMFF026A12+          TTGCTGGCATCGATGCTAGTGCAGTCGAATTCAGCAAAATCGCAGTTGGTCCTGTTGACT
                      ____________________________________________________________
consensus             TTGCTGGCATCGATGCTAGTGCAGTCGAATTCAGCAAAATCGCAGTTGGTCCTGTTGACT
 
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rJMFF026A12+          GGGATTACTATCGAGTTGCTGCAGTGCAAGAGAAGTACATGAAGGATGATGAAGATGATT
                      ____________________________________________________________
consensus             GGGATTACTATCGAGTTGCTGCAGTGCAAGAGAAGTACATGAAGGATGATGAAGATGATT
 
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rJMFF026A12+          TTGGCAAGGATGGGTGATGACACTAAAGCCTCTTCAGTTTCAAAACTGGGCATGCATGTT
                      ____________________________________________________________
consensus             TTGGCAAGGATGGGTGATGACACTAAAGCCTCTTCAGTTTCAAAACTGGGCATGCATGTT
 
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rJMFF026A12+          AGAAAACTATACTTTAGTGGTACTACTTTTGTCAAAACGTATCATAGTCATTGGTTGTAC
                      ____________________________________________________________
consensus             AGAAAACTATACTTTAGTGGTACTACTTTTGTCAAAACGTATCATAGTCATTGGTTGTAC
 
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rJMFF026A12+          ATCATTACTGAAATTCAGTGACATATGGGCTTGCTTAAGTGACACATATGTTCAAACTCT
                      ____________________________________________________________
consensus             ATCATTACTGAAATTCAGTGACATATGGGCTTGCTTAAGTGACACATATGTTCAAACTCT