Contig 011074:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004K20Sequence481004853 (10)ref|XP_008394069.1|2e-60PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming]-like [Malus d712011074 (3)gb|AAO25536.1|1e-65cellulose synthase [Populus tremuloides]
JMFF025G15Sequence579004853 (10)ref|XP_008219478.1|9e-66PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Prunus mume]714011074 (3)gb|AAO25536.1|1e-65cellulose synthase [Populus tremuloides]
JMFF025J04Sequence712011074 (3)gb|AAO25536.1|2e-78cellulose synthase [Populus tremuloides]

Alignment

This contig is upended


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rJMFF004K20+              TCTAAAAGTACTTGCCGGGATTGATA-CCAATTTCACCGTCACTTCAAAGGCGTCC
rJMFF025G15+                 AAAAGTACTTGCCGGGATTGATA-CCAATTTCACCGTCACTTCAAAGGCGTCC
rJMFF025J04+                 AAAAGTACTTGCCGGGATTGATACCCAATTTCACCGTCACTTCAAAGGCGTCC
                      ____________________________________________________________
consensus                 TCTAAAAGTACTTGCCGGGATTGATA-CCAATTTCACCGTCACTTCAAAGGCGTCC
 
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rJMFF004K20+          GATGAAGACGGAGATTTCGCCGAGCTTTACGTGTTCAAATGGACGTCCCTTCTCCATTCC
rJMFF025G15+          GATGAAGACGGAGATTTCGCCGAGCTTTACGTGTTCAAATGGACGTCCCTTCTCCATTCC
rJMFF025J04+          GATGAAGACGGAGATTTCGCCGAGCTTTACGTGTTCAAATGGACGTCCCTTCT-CATTCC
                      ____________________________________________________________
consensus             GATGAAGACGGAGATTTCGCCGAGCTTTACGTGTTCAAATGGACGTCCCTTCTCCATTCC
 
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rJMFF004K20+          CCCAACCACAGTCCTCATAGTCAACCTAGTAGGCATAGTGGCGGGCGTCTCGTTCGCCAT
rJMFF025G15+          CCCAACCACAGTCCTCATAGTCAACCTAGTAGGCATAGTGGCGGGCGTCTCGTTCGCCAT
rJMFF025J04+          CCCAACCACAGTCCTCATAGTCAACCTAGTAGGCATAGTGGCGGGCGTCTCGTTCGCCAT
                      ____________________________________________________________
consensus             CCCAACCACAGTCCTCATAGTCAACCTAGTAGGCATAGTGGCGGGCGTCTCGTTCGCCAT
 
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rJMFF004K20+          AAACAGCGGGTACCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCTTCGCCATTTGGGT
rJMFF025G15+          AAACAGCGGGTACCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCTTCGCCATTTGGGT
rJMFF025J04+          AAACAGCGGGTACCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCTTCGCCATTTGGGT
                      ____________________________________________________________
consensus             AAACAGCGGGTACCAGTCGTGGGGCCCTCTATTCGGGAGACTGTTCTTCGCCATTTGGGT
 
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rJMFF004K20+          GATCGTGCACTTGTATCCTTTCCTCAAAGGTCTATTGGGCAGGCAGAACCGCACTCCTAC
rJMFF025G15+          GATCGTGCACTTGTATCCTTTCCTCAAAGGTCTATTGGGCAGGCAGAACCGCACTCCTAC
rJMFF025J04+          GATCGTGCACTTGTATCCTTTCCTCAAAGGTCTATTGGGCAGGCAGAACCGCACTCCTAC
                      ____________________________________________________________
consensus             GATCGTGCACTTGTATCCTTTCCTCAAAGGTCTATTGGGCAGGCAGAACCGCACTCCTAC
 
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rJMFF004K20+          TATCGTCATCGTCTGGTCCATACTTCTCGCATCCATCTTCTCGTTGCTATGGGTGCGAAT
rJMFF025G15+          TATCGTCATCGTCTGGTCCATACTTCTCGCATCCATCTTCTCGTTGCTATGGGTGCGAAT
rJMFF025J04+          TATCGTCATCGTCTGGTCCATACTTCTCGCATCCATCTTCTCGTTGCTATGGGTGCGAAT
                      ____________________________________________________________
consensus             TATCGTCATCGTCTGGTCCATACTTCTCGCATCCATCTTCTCGTTGCTATGGGTGCGAAT
 
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rJMFF004K20+          CGACCCCTTCACCTCCGACAGCGCCAAAGCGGCCGCTGGAGGTCAATGTGGCATCAACTG
rJMFF025G15+          CGACCCCTTCACCTCCGACAGCGCCAAAGCGGCCGCTGGAGGTCAATGTGGCATCAACTG
rJMFF025J04+          CGACCCCTTCACCTCCGACAGCGCCAAAGCGGCCGCTGGAGGTCAATGTGGCATCAACTG
                      ____________________________________________________________
consensus             CGACCCCTTCACCTCCGACAGCGCCAAAGCGGCCGCTGGAGGTCAATGTGGCATCAACTG
 
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rJMFF004K20+          CTAAGTTGCCCATTTTTCGTTAGACGAAGTTGTCTGCAATCACCAAGCCCGCACTAAACA
rJMFF025G15+          CTAAGTTGCCCATTTTTCGTTAGACGAAGTTGTCTGCAATCACCAAGCCCGCACTAAACA
rJMFF025J04+          CTAAGTTGCCCATTTTTCGTTAGACGAAGTTGTCTGCAATCACCAAGCCCGCACTAAACA
                      ____________________________________________________________
consensus             CTAAGTTGCCCATTTTTCGTTAGACGAAGTTGTCTGCAATCACCAAGCCCGCACTAAACA
 
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rJMFF004K20+          CCGCGTGCACCCTCATGTATATAGGCAAGAAACCAAACCGAGGTGCGAAATTGCACGCGG
rJMFF025G15+          CCGCGTGCACCCTCATGTATATAGGCAAGAAACCAAACCGAGGTGCGAAATTGCACGCGG
rJMFF025J04+          CCGCGTGCACCCTCATGTATATAGGCAAGAAACCAAACCGAGGTGCGAAATTGCACGCGG
                      ____________________________________________________________
consensus             CCGCGTGCACCCTCATGTATATAGGCAAGAAACCAAACCGAGGTGCGAAATTGCACGCGG
 
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rJMFF004K20+          GATTGCCTTATAGTTAAAATTATTGTACTGTTGTATCATGTCTCTTTGCAAGAAAGTGTA
rJMFF025G15+          GATTGCCTTATAGTTAAAATTATTGTACTGTTGTATCATGTCTCTTTGCAAGAAAGTGTA
rJMFF025J04+          GATTGCCTTATAGTTAAAATTATTGTACTGTTGTATCATGTCTCTTTGCAAGAAAGTGTA
                      ____________________________________________________________
consensus             GATTGCCTTATAGTTAAAATTATTGTACTGTTGTATCATGTCTCTTTGCAAGAAAGTGTA
 
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rJMFF004K20+          GGTGTGAATGATGGACCTCAATTTGTTACATTTTTTAGTGTAAAGTATTCTTACAGGTTG
rJMFF025G15+          GGTGTGAATGATGGACCTCAATTTGTTACATTTTTTAGTGTAAAGTATTCTTACAGGTTG
rJMFF025J04+          GGTGTGAATGATGGACCTCAATTTGTTACATTTTTTAGTGTAAAGTATTCTTACAGGTTG
                      ____________________________________________________________
consensus             GGTGTGAATGATGGACCTCAATTTGTTACATTTTTTAGTGTAAAGTATTCTTACAGGTTG
 
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rJMFF004K20+          GTTATTCCTTGTTGAGAAACATGTATGTATTCATGGCAGCAGCTTCAGATACACCTT   
rJMFF025G15+          GTTATTCCTTGTTGAGAAACATGTATGTATTCATGGCAGCAGCTTCAGATACACCTT   
rJMFF025J04+          GTTATTCCTTGTTGAGAAACATGTATGTATTCATGGCAGCAGCTTCAGATACACCTTCAA
                      ____________________________________________________________
consensus             GTTATTCCTTGTTGAGAAACATGTATGTATTCATGGCAGCAGCTTCAGATACACCTTCAA