Contig 011063:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS012D05+                                                              CAAGCTTAA
JMFS126H03+                                                               AAGCTTAA
JMFN009M03+                                                              CAAGCTTAA
JMFS117G04+                                                              CAAGCTTAA
                      ____________________________________________________________
consensus                                                                CAAGCTTAA
 
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JMFS012D05+           TCACATTTTATTGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
JMFS126H03+           TCACATTTTATTGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
JMFN006F13+                       GGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
JMFN009M03+           TCACATTTTATTGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
JMFS117G04+           TCACATTTTATTGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
rJMFF035J08-               TTTTATTGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
rJMFF029E19-                     TGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
rJMFF015J10-                     TGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
rJMFF037G06-                     TGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
rJMFF023I19-               TTTTATTGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
                      ____________________________________________________________
consensus             TCACATTTTATTGGATTTATTAAAGCATTATTCCAATTCTAATCAGTTCTTAATGACGTT
 
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JMFS012D05+           AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
JMFS126H03+           AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
JMFN006F13+           AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
JMFN009M03+           AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
JMFS117G04+           AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
rJMFF035J08-          AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
rJMFF029E19-          AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
rJMFF015J10-          AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
JMFF035J08+                             ACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
JMFF037G06+                                                  ATCCTCAGCATTAGAACAAGG
rJMFF037G06-          AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
rJMFF023I19-          AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
                      ____________________________________________________________
consensus             AAGAACATCCACTGAAATACTAAGAAGCGTGAGGACATAATCCTCAGCATTAGAACAAGG
 
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JMFS012D05+           AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
JMFS126H03+           AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
JMFN006F13+           AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
JMFN009M03+           AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
JMFS117G04+           AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
rJMFF035J08-          AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
rJMFF029E19-          AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
rJMFF015J10-          AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
JMFF035J08+           AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTN
JMFF037G06+           AACTNCATCCTTCATGNGATATTTAACCGCCGGNGCATGATGTTTGGTCGTCAACTTNTT
rJMFF037G06-          AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
rJMFF023I19-          AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
                      ____________________________________________________________
consensus             AACTACATCCTTCATGCGATATTTAACCGCCGGCGCATGATGTTTGGTCGTCAACTTCTC
 
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JMFS012D05+           TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
JMFS126H03+           TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
JMFN006F13+           TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
JMFN009M03+           TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
JMFS117G04+           TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
rJMFF035J08-          TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
rJMFF029E19-          TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
rJMFF015J10-          TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
JMFF035J08+           TATGGCATNTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCN
JMFF037G06+           TATGGCATTTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCN
rJMFF037G06-          TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
rJMFF023I19-          TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
                      ____________________________________________________________
consensus             TATGGCATCTTCCCCGCTGCCGCCGCGGTCGCCAACAAGTTTCCGGTACGCCTCCGGGCA
 
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JMFS012D05+           CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
JMFS126H03+           CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
JMFN006F13+           CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
JMFN009M03+           CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
JMFS117G04+           CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
rJMFF035J08-          CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
rJMFF029E19-          CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
rJMFF015J10-          CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
JMFF035J08+           CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACNC
JMFF037G06+           CCTTTCCTTCAGATCATCAATCNCTGAAACTGCTTTATCGAGGACGATTATGNTAAACNC
rJMFF037G06-          CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
rJMFF023I19-          CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
                      ____________________________________________________________
consensus             CCTTTCCTTCAGATCATCAATCACTGAAACTGCTTTATCGAGGACGATTATGCTAAACAC
 
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JMFS012D05+           TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
JMFS126H03+           TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
JMFN006F13+           TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
JMFN009M03+           TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
JMFS117G04+           TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
rJMFF035J08-          TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
rJMFF029E19-          TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
rJMFF015J10-          TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
JMFF035J08+           TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTNTATGACGGAAGCGCAGAGATCGGG
JMFF037G06+           TGTCNCGTCGCCATCGGTGCTGCGGGGATNGGATTTTATGACGGAAGCGCAGAGATCGGG
JMFF023I19+                                                     GGAAGCGCAGAGATNGGG
rJMFF037G06-          TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
rJMFF023I19-          TGTCACGTCGACATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
                      ____________________________________________________________
consensus             TGTCACGTCGCCATCGGTGCTGCGGGGATCGGATTCTATGACGGAAGCGCAGAGATCGGG
 
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JMFS012D05+           CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
JMFS126H03+           CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
JMFN006F13+           CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
JMFN009M03+           CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
JMFS117G04+           CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
rJMFF035J08-          CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
rJMFF029E19-          CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
rJMFF015J10-          CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
JMFF035J08+           CGCTTGGGTCTCCGCGCAAGCGGTNTGGATTACTAGGGCGTGGCCGTNTGCGGCGGCGGA
JMFF037G06+           CGCTTGGGTNTCCGCGCAAGCGGTNTGGATTNCTAGGGCGTGGCCGTNTGCGGCGGCGGA
JMFF023I19+           CGCTTGGGTNTCCGCGCAAGCGGTNTGGANTAATAGGGCGTGGCCNTCTGCGGCGGCGGA
rJMFF037G06-          CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
rJMFF023I19-          CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
                      ____________________________________________________________
consensus             CGCTTGGGTCTCCGCGCAAGCGGTCTGGATTACTAGGGCGTGGCCGTCTGCGGCGGCGGA
 
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JMFS012D05+           GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
JMFS126H03+           GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
JMFN006F13+           GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
JMFN009M03+           GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
JMFS117G04+           GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
rJMFF035J08-          GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
rJMFF029E19-          GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
rJMFF015J10-          GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
JMFF035J08+           GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
JMFF037G06+           GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
JMFF023I19+           GAATTGCCGGGGAAGCAAAACGGTGGNGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
rJMFF037G06-          GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
rJMFF023I19-          GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
                      ____________________________________________________________
consensus             GAATTGCCGGGGAAGCAAAACGGTGGTGAATAGGAGGAAGGAGAGGAGAGCGAAAACGGA
 
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JMFS012D05+           AGGCTTCATTTTGG                                              
JMFS126H03+           AGGCTTCATTTTG                                               
JMFN006F13+           AGGCTTCATTTTGGTTGTG                                         
JMFN009M03+           AGGCTTCATTTTGGTTGTGTTT                                      
JMFS117G04+           AGGCTTCATTTTGGTTGTGTTTTT                                    
rJMFF035J08-          AGGCTTCATTTTGGTTGTGTTTTTTTTTT                               
rJMFF029E19-          AGGCTTCATTTTGGTTGTGTTTTTTTTTTT                              
rJMFF015J10-          AGGCTTCATTTTGGTTGTGTTTTTTTTTTTTGGAGTC                       
JMFF035J08+           AGGCTTCATTTTGGTTGTGTTTTTTTTTT                               
JMFF037G06+           AGGCTTCATTTTGGTTGNGTTTTTTTTTTT                              
JMFF023I19+           AGGNTTCATTTTGGTTGTGTTTTTTTTTTT                              
rJMFF037G06-          AGGCTTCATTTTGGTTGTGTTTTTTTTTTT                              
rJMFF023I19-          AGGCTTCATTTTGGTTGTGTTTTTTTTTTTTGGAGTCATCGCTGTTCCANACAGCGATGA
                      ____________________________________________________________
consensus             AGGCTTCATTTTGGTTGTGTTTTTTTTTTTTGGAGTCATCGCTGTTCCANACAGCGATGA