Contig 011062:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF025N12-                               GAGTTGCCCGCAAGAACGGAATCGCATCTGCAAATCCTTT
JMSF049P08-                      GGTTGAGTTGAGTTGCCCGCAAGAACGGAATCGCATCTGCAAATCCTTT
                      ____________________________________________________________
consensus                        GGTTGAGTTGAGTTGCCCGCAAGAACGGAATCGCATCTGCAAATCCTTT
 
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JMSF025N12-           TTTTACAATATCAGTTTTAGAGAGAGAAAGTGAAGGAAAAGGACAACGATATTCTTTATT
JMSF049P08-           TTTTACAATATCAGTTTTAGAGAGAGAAAGTGAAGGAAAAGGACAACGATATTCTTTATT
                      ____________________________________________________________
consensus             TTTTACAATATCAGTTTTAGAGAGAGAAAGTGAAGGAAAAGGACAACGATATTCTTTATT
 
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JMSF025N12-           TTTTCTCTCTCTAACCGTATGCATACAGTATATACATACATACATAGTGTCTGTGTGTAT
JMSF049P08-           TTTTCTCTCTCTAACCGTATGCATACAGTATATACATACATACATAGTGTCTGTGTGTAT
                      ____________________________________________________________
consensus             TTTTCTCTCTCTAACCGTATGCATACAGTATATACATACATACATAGTGTCTGTGTGTAT
 
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JMSF025N12-           ATGCAATTATATATTCCTTTCTCTCTGTATTTTATATGTGCTTAGCTAATATTTTTTCTC
JMSF049P08-           ATGCAATTATATATTCCTTTCTCTCTGTATTTTATATGTGCTTAGCTAATATTTTTTCTC
                      ____________________________________________________________
consensus             ATGCAATTATATATTCCTTTCTCTCTGTATTTTATATGTGCTTAGCTAATATTTTTTCTC
 
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JMSF025N12-           TCT-TAACCGTATGCATACAGTATATACATACATACATAGTGTCTGTGTGTATATGCAAT
JMSF049P08-           TCTCTAACCGTATGCATACAGTATATACATACATACATAGTGTCTGTGTGTATATGCAAT
                      ____________________________________________________________
consensus             TCTCTAACCGTATGCATACAGTATATACATACATACATAGTGTCTGTGTGTATATGCAAT
 
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JMSF025N12-           TATATATTCCTTTCTCTCTGTATTTTATATGTGCTTAGCTAATAGCTATACAGGACGGAT
JMSF049P08-           TATATATTCCTTTCTCTCTGTATTTTATATGTGCTTAGCTAATAGCTATACAGGACGGAT
                      ____________________________________________________________
consensus             TATATATTCCTTTCTCTCTGTATTTTATATGTGCTTAGCTAATAGCTATACAGGACGGAT
 
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JMSF025N12-           GATGAATGGTGCTGTAAGCTTTTCCTCTTTTCTGCTCTCTTTTTTCTCTTCTTAAGTAGA
JMSF049P08-           GATGAATGGTGCTGTAAGCTTTTCCTCTTTTCTGCTCTCTTTTTTCTCTTCTTAAGTAGA
                      ____________________________________________________________
consensus             GATGAATGGTGCTGTAAGCTTTTCCTCTTTTCTGCTCTCTTTTTTCTCTTCTTAAGTAGA
 
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JMSF025N12-           AAGCGTTGTCACTGTTGCATAGTTTTAACTGCTGCTGAGGTTCTAGAGAGAGAGAGAATG
JMSF049P08-           AAGCGTTGTCACTGTTGCATAGTTTTAACTGCTGCTGGGGTTCTAGAGAGAGAGAGAATG
                      ____________________________________________________________
consensus             AAGCGTTGTCACTGTTGCATAGTTTTAACTGCTGCTGGGGTTCTAGAGAGAGAGAGAATG
 
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JMSF025N12-           GGGTCGTCGTCGACTGGACAGAGCAGTAGCGGGGGGTTTGATCTGTCGTTTAAGATCTTG
JMSF049P08-           GGGTCGTCGTCGACTGGACAGAGCAGTAGCGGGGGGTTTGATCTGTCGTTTAAGATCTTG
JMFF023D17-                                                 TGATCTGTCGTTTAAGATCTTG
                      ____________________________________________________________
consensus             GGGTCGTCGTCGACTGGACAGAGCAGTAGCGGGGGGTTTGATCTGTCGTTTAAGATCTTG
 
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JMSF025N12-           TTGATCGGAGATTCGGGAGTAGGAAAAAGTAGCCTGCTCGTCAGCTTCATTTCTAATGCC
JMSF049P08-           TTGATCGGAGATTCGGGAGTAGGAAAAAGTAGCCTGCTCGTCAGCTTCATTTCTAATGCC
JMFF023D17-           TTGATCGGAGATTCGGGAGTAGGAAAAAGTAGACTGCTCGTCAGCTTCATTTCTAATGCC
                      ____________________________________________________________
consensus             TTGATCGGAGATTCGGGAGTAGGAAAAAGTAGCCTGCTCGTCAGCTTCATTTCTAATGCC
 
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JMSF025N12-           CTTGACGATCTTGCCCCTACCATTGGT                                 
JMSF049P08-           CTTGACGATCTTGCCCCTACCATTGGT                                 
JMFF023D17-           CTTGACGATCTTGCCCCTACCATTGGTGTTGATTTTAAGATGAAGACGCTCGCTGTTGGT
rJMSF049P08+                                               AGATGAAGACGCTCGCTGTTGGT
rJMSF025N12+                                               AGATGAAGACGCTCGCTGTTGGT
                      ____________________________________________________________
consensus             CTTGACGATCTTGCCCCTACCATTGGTGTTGATTTTAAGATGAAGACGCTCGCTGTTGGT
 
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JMFF023D17-           GGGAAAAGACTGAAACTTACACTTTGGGACACAGCCGGACAGGAGAGGTTCAGAACATTG
rJMSF049P08+          -GGAAAAGACTGAAACTTACACTTTGGGACACAGCCGGACAGGAGAGGTTCAGAACATTG
rJMSF025N12+          GGGAAAAGACTGAAACTTACACTTTGGGACACAGCCGGACAGGAGAGGTTCAGAACATTG
rJMFF023D17+                                                    GAGAGGTTCAGAACATTG
                      ____________________________________________________________
consensus             GGGAAAAGACTGAAACTTACACTTTGGGACACAGCCGGACAGGAGAGGTTCAGAACATTG
 
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JMFF023D17-           ACAAGCTCTTATTACAGAGGTGCTCAGGCAATCATTCTTGTTTATGATGTGACAAAGAGA
rJMSF049P08+          ACAAGCTCTTATTACAGAGGTGCTCAGGCAATCATTCTTGTTTATGATGTGACAAAGAGA
rJMSF025N12+          ACAAGCTCTTATTACAGAGGTGCTCAGGCAATCATTCTTGTTTATGATGTGACAAAGAGA
rJMFF023D17+          ACAAGCTCTTATTACAGAGGTGCTCAGGCAATCATTCTTGTTTATGATGTGACAAAGAGA
                      ____________________________________________________________
consensus             ACAAGCTCTTATTACAGAGGTGCTCAGGCAATCATTCTTGTTTATGATGTGACAAAGAGA
 
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JMFF023D17-           GTTACCTTCACAAATATATCTGACGTATGGGCAAAAGAGA                    
rJMSF049P08+          GTTACCTTCACAAATATATCTGACGTATGGGCAAAAGAGATGGAGCTTTACTCAACTAAT
rJMSF025N12+          GTTACCTTCACAAATATATCTGACGTATGGGCAAAAGAGATGGAGCTTTACTCAACTAAT
rJMFF023D17+          GTTACCTTCACAAATATATCTGACGTATGGGCAAAAGAGATGGAGCTTTACTCAACTAAT
                      ____________________________________________________________
consensus             GTTACCTTCACAAATATATCTGACGTATGGGCAAAAGAGATGGAGCTTTACTCAACTAAT
 
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rJMSF049P08+          CAGGATTGTGTCAAAATGCTTGTTGGGAACAAAGTTGACAGAGAATCTGAGAGAGTTGTC
rJMSF025N12+          CAGGATTGTGTCAAAATGCTTGTTGGGAACAAAGTTGACAGAGAATCTGAGAGAGTTGTC
rJMFF023D17+          CAGGATTGTGTCAAAATGCTTGTTGGGAACAAAGTTGACAGAGAATCTGAGAGAGTTGTC
                      ____________________________________________________________
consensus             CAGGATTGTGTCAAAATGCTTGTTGGGAACAAAGTTGACAGAGAATCTGAGAGAGTTGTC
 
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rJMSF049P08+          AGCAGGGAGGAAGGTATAACTCTGGCAAAAGAGCTTGGAAGTTTATTTCTTGAATGTAGT
rJMSF025N12+          AGCAGGGAGGAAGGTATAACTCTGGCAAAAGAGCTTGGAAGTTTATTTCTTGAATGTAGT
rJMFF023D17+          AGCAGGGAGGAAGGTATAACTCTGGCAAAAGAGCTTGGAAGTTTATTTCTTGAATGTAGT
                      ____________________________________________________________
consensus             AGCAGGGAGGAAGGTATAACTCTGGCAAAAGAGCTTGGAAGTTTATTTCTTGAATGTAGT
 
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rJMSF049P08+          GCAAGGACACGAGAAAATGTGGAGCAATGTTTTGAAGAGCTTGCCTTAAAGATAATGGAG
rJMSF025N12+          GCAAGGACACGAGAAAATGTGGAGCAATGTTTTGAAGAGCTTGCCTTAAAGATAATGGAG
rJMFF023D17+          GCAAGGACACGAGAAAATGTGGAGCAATGTTTTGAAGAGCTTGCCTTAAAGATAATGGAG
                      ____________________________________________________________
consensus             GCAAGGACACGAGAAAATGTGGAGCAATGTTTTGAAGAGCTTGCCTTAAAGATAATGGAG
 
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rJMSF049P08+          GTGCCTAGTCTTTTGGAAAAAGGATCTACCACAGTGAAGAGAAATATCTTAAAGCAGAAA
rJMSF025N12+          GTGCCTAGTCTTTTGGAAAAAGGATCTACCACAGTGAAGAGAAATATCTTAAAGCAGAAA
rJMFF023D17+          GTGCCTAGTCTTTTGGAAAAAGGATCTACCACAGTGAAGAGAAATATCTTAAAGCAGAAA
                      ____________________________________________________________
consensus             GTGCCTAGTCTTTTGGAAAAAGGATCTACCACAGTGAAGAGAAATATCTTAAAGCAGAAA
 
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rJMSF049P08+          CAAGAACATCAAACACAAACTGGTGGAGGCTGTTGCTCATAGAAGAATGGGGGATATAGA
rJMSF025N12+          CAAGAACATCAAACACAAACTGGTGGAGGCTGTTGCTCATAGAAGAATGGGGGATATAGA
rJMFF023D17+          CAAGAACATCAAACACAAACTGGTGGAGGCTGTTGCTCATAGAAGAATGGGGGATATAGA
                      ____________________________________________________________
consensus             CAAGAACATCAAACACAAACTGGTGGAGGCTGTTGCTCATAGAAGAATGGGGGATATAGA
 
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rJMSF049P08+          CTCTGCTCTTGACAGATGTATCGTACGAAGTGCTCTGGATGGGGATCATGTTTCCTGGAC
rJMSF025N12+          CTCTGCTCTTGACAGATGTATCGTACGAAGTGCTCTGGATGGGGATCATGTTTCCTGGAC
rJMFF023D17+          CTCTGCTCTTGACAGATGTATCGTACGAAGTGCTCTGGATGGGGATCATGTTTCCTGGAC
                      ____________________________________________________________
consensus             CTCTGCTCTTGACAGATGTATCGTACGAAGTGCTCTGGATGGGGATCATGTTTCCTGGAC
 
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rJMSF049P08+          AGATTGTGACCAGATTTGTAAATGAGGGTTTTGTTTTCTCATGCTGCTGCTTTATTTCGT
rJMSF025N12+          AGATTGTGACCAGATTTGTAAATGAGGGTTTTGTTTTCTCATGCTGCTGCTTTATTTCGT
rJMFF023D17+          AGATTGTGACCAGATTTGTAAATGAGGGTTTTGTTTTCTCATGCTGCTGCTTTATTTCGT
                      ____________________________________________________________
consensus             AGATTGTGACCAGATTTGTAAATGAGGGTTTTGTTTTCTCATGCTGCTGCTTTATTTCGT
 
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rJMSF049P08+          GCTTGAGGTCGTCGTACTGAGTGTGCTGCTGCTGCTCTGGGAATGTTGCCTTGACCTCTC
rJMSF025N12+          GCTTGAGGTCGTCGTACTGAGTGTGCTGCTGCTGCTCTGGGAATGTTGCCTTGACCTCTC
rJMFF023D17+          GCTTGAGGTCGTCGTACTGAGTGTGCTGCTGCTGCTCTGGGAATGTTGCCTTGACCTCTC
                      ____________________________________________________________
consensus             GCTTGAGGTCGTCGTACTGAGTGTGCTGCTGCTGCTCTGGGAATGTTGCCTTGACCTCTC
 
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rJMSF049P08+          TATTAGTTAGGTGT                                              
rJMSF025N12+          TATTAGTTAGGTGT-ATAGTGAATGGTCAGTTTGGTTTTCTGATCTCTTTTCCTGTCCAT
rJMFF023D17+          TATTAGTTAGGTGTNTTAGTGAATGGTCAGTTTGGTTTTCTGATCTCTTTTCCTGTCCAT
                      ____________________________________________________________
consensus             TATTAGTTAGGTGTNTTAGTGAATGGTCAGTTTGGTTTTCTGATCTCTTTTCCTGTCCAT
 
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rJMSF025N12+          ACATGGAGATTGCTAAGAAAACCAAATTGAATGT                          
rJMFF023D17+          ACATGGAGATTGCTAAGAAAACCAAATTGAATGTATTTATTATCATTCTCCGATTTAATT
                      ____________________________________________________________
consensus             ACATGGAGATTGCTAAGAAAACCAAATTGAATGTATTTATTATCATTCTCCGATTTAATT