Contig 011061:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022K16Sequence456002427 (2)ref|XP_006352796.1|2e-53PREDICTED: NPL4-like protein 1-like [Solanum tuberosum]731011061 (4)ref|XP_010279622.1|2e-81PREDICTED: NPL4-like protein 1 [Nelumbo nucifera]
JMFN005L01Sequence515011061 (4)gb|ACU21270.1|4e-49unknown [Glycine max]
JMFN016G09Sequence618011061 (4)gb|ACU21270.1|3e-51unknown [Glycine max]
JMSF044P11Sequence658002427 (2)ref|XP_006352796.1|5e-101PREDICTED: NPL4-like protein 1-like [Solanum tuberosum]598011061 (4)gb|ACU21270.1|2e-51unknown [Glycine max]

Alignment

This contig is upended


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JMFN016G09+                                         ATTGCAATAAAAGGAAATCATAAAAATAAT
rJMSF044P11-                                                                    AT
                      ____________________________________________________________
consensus                                           ATTGCAATAAAAGGAAATCATAAAAATAAT
 
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JMFN005L01+                               AAACAAACAACTCAGAAAATCTTAATAAAACTAAATAAAT
JMFN016G09+           ATNCAAATATAGTATAACATAAACAAACAACTCAGAAAATCTTAATAAAACTAAATAAAT
rJMSF044P11-          ATACAAATATAGTATAACATAAACAAACAACTCAGAAAATCTTAATAAAACTAAATAAAT
rJMFF022K16-                                                           ACTAAATAAAT
                      ____________________________________________________________
consensus             ATACAAATATAGTATAACATAAACAAACAACTCAGAAAATCTTAATAAAACTAAATAAAT
 
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JMFN005L01+           AATGTATTGTTTGATTTTAGTTACATCAGCAAATGTGCAAGGCATACAACATTATCAGAG
JMFN016G09+           AATGTATTGTTTGATTTTAGTTACATCAGCAAATGTGCAAGGCATACAACATTATCAGAG
rJMSF044P11-          AATGTATTGTTTGATTTTAGTTACATCAGCAAATGTGCAAGGCATACAACATTATCAGAG
rJMFF022K16-          NATGTATTGTTTGATTTTAGTTACATCAGCANATGTGCNAGGCATACAACATTATCANAG
                      ____________________________________________________________
consensus             AATGTATTGTTTGATTTTAGTTACATCAGCAAATGTGCAAGGCATACAACATTATCAGAG
 
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JMFN005L01+           AAGTCTGCCCATTGCAAAGGCACTGAGGTTTGATTCCATGGGGGGCTTTTGTGAGGTCAA
JMFN016G09+           AAGTCTGCCCATTGCAAAGGCACTGAGGTTTGATTCCATGGGGGGCTTTTGTGAGGTCAA
rJMSF044P11-          AAGTCTGCCCATTGCAAAGGCACTGAGGTTTGATTCCATGGGGGGCTTTTGTGAGGTCAA
rJMFF022K16-          AAGTCTGCCCATTGCANAGGCACTGAGGTTTGATTCCATGGGGGGCTTTTGTGAGGTCAA
                      ____________________________________________________________
consensus             AAGTCTGCCCATTGCAAAGGCACTGAGGTTTGATTCCATGGGGGGCTTTTGTGAGGTCAA
 
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JMFN005L01+           TTTTGGCTGGCGTTTTCTCATATCTCATCATCCCACTCCTTTGCTGATTCATATCCTAGT
JMFN016G09+           TTTTGGCTGGCGTTTTCTCATATCTCATCATCCCACTCCTTTGCTGATTCATATCCTAGT
rJMSF044P11-          TTTTGGCTGGCGTTTTCTCATATCTCATCATCCCACTCCTTTGCTGATTCATATCCTAGT
rJMFF022K16-          TTTTGGCTGGCGTTTTCTCATATCTCATCATCCCACTCCTTTGCTGATTCATATCCTAGN
                      ____________________________________________________________
consensus             TTTTGGCTGGCGTTTTCTCATATCTCATCATCCCACTCCTTTGCTGATTCATATCCTAGT
 
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JMFN005L01+           GTGGCTTAAGAAGCACTGGCCATGGACTCTATAAGGAGTTGATAACCCTCGGGGACGGGT
JMFN016G09+           GTGGCTTAAGAAGCACTGGCCATGGACTCTATAAGGAGTTGATAACCCTCGGGGACGGGT
rJMSF044P11-          GTGGCTTAAGAAGCACTGGCCATGGACTCTATAAGGAGTTGATAACCCTCGGGGACGGGT
rJMFF022K16-          GTGGCTTAAGAAGCACTGGCCATGGACTCTATAAGGAGTTGATAACCCTCGGGGACGGGT
                      ____________________________________________________________
consensus             GTGGCTTAAGAAGCACTGGCCATGGACTCTATAAGGAGTTGATAACCCTCGGGGACGGGT
 
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JMFN005L01+           GTCTGTGTTTGCACACATTCAGCTAATGCAGGTACATCAGCATTAATGTCCAAAAACCGT
JMFN016G09+           GTCTGTGTTTGCACACATTCAGCTAATGCAGGTACATCAGCATTAATGTCCAAAAACCGT
rJMSF044P11-          GTCTGTGTTTGCACACATTCAGCTAATGCAGGTACATCAGCATTAATGTCCAAAAACCGT
rJMFF022K16-          GTCTGTGTTTGCACACATTCANCTAATGCANGTACATCANCATTAATGTCCAAAAACCGT
                      ____________________________________________________________
consensus             GTCTGTGTTTGCACACATTCAGCTAATGCAGGTACATCAGCATTAATGTCCAAAAACCGT
 
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JMFN005L01+           CCCAACAAGAGCATCAGGTGAAAATCTGAAATTCGCTTCACGAATGGGACACTCTTTGTT
JMFN016G09+           CCCAACAAGAGCATCAGGTGAAAATCTGAAATTCGCTTCACGAATGGGACACTCTTTGTT
rJMSF044P11-          CCCAACAAGAGCATCAGGTGAAAATCTGAAATTCGCTTCACGAATGGGACACTCTTTGTT
rJMFF022K16-          CCCAACAAGANCATCAGGTGAAAATCTGAAATTCNCTTCACNAATGGGACACTCTTTGTT
                      ____________________________________________________________
consensus             CCCAACAAGAGCATCAGGTGAAAATCTGAAATTCGCTTCACGAATGGGACACTCTTTGTT
 
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JMFN005L01+           CGATCAAAATGATTTTTCAGTGCCCTCATTGTCACAGGAACATTTCTGTTCTCGATAGGG
JMFN016G09+           CGATCAAAATGATTTTTCAGTGCCCTCATTGTCACAGGAACATTTCTGTTCTCGATAGGG
rJMSF044P11-          CGATCAAAATGATTTTTCAGTGCCCTCATTGTCACAGGAACATTTCTGTTCTCGATAGGG
rJMFF022K16-          CGATCAAAATGATTTTTCNGTGCCCTCATTGTCACAGGAACATTTCTGTTCTCGATAGGG
                      ____________________________________________________________
consensus             CGATCAAAATGATTTTTCAGTGCCCTCATTGTCACAGGAACATTTCTGTTCTCGATAGGG
 
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JMFN005L01+           AAAGCCGATGAAAGTGGACCCTGGTGATCAGCAATCTTAACAACAACCAAGAAAA     
JMFN016G09+           AAAGCCGATGAAAGTGGACCCTGGTGATCAGCAATCTTAACAACAACCAAGAAAAAATCA
rJMSF044P11-          AAAGCCGATGAAAGTGGACCCTGGTGATCAGCAATCTTAACAACAACCAAGAAAAAATCA
rJMFF022K16-          AAAGCCGATGAAAGNGGACCCTGGTGATCAGCAATCTTAACAACAACCAAGAAAAAATCA
                      ____________________________________________________________
consensus             AAAGCCGATGAAAGTGGACCCTGGTGATCAGCAATCTTAACAACAACCAAGAAAAAATCA
 
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JMFN016G09+           TTGTCAACCTCTTTAGTATCCTTCACTCCAACAACCACGTCTTTCTTC            
rJMSF044P11-          TTGTCAACCTCTTNAGTATCCTTCACTCCAACAACCACGTCTTTCTTCATCCTTGA    
rJMFF022K16-          TTGTCAACCTCTTTAGTATCCTTCACTCCAACAACCACGTCTTTCTTCATCCTTGAAAGC
                      ____________________________________________________________
consensus             TTGTCAACCTCTTTAGTATCCTTCACTCCAACAACCACGTCTTTCTTCATCCTTGAAAGC
 
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rJMFF022K16-          TTGGGATCTAAATCTTCNGTGCCTTCTGTCTCAAACCACCCTTCCTTGAACAATCTGATA
                      ____________________________________________________________
consensus             TTGGGATCTAAATCTTCNGTGCCTTCTGTCTCAAACCACCCTTCCTTGAACAATCTGATA
 
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rJMFF022K16-          CATATATCACTCATCTGGAATGCCTCAAAATGCACATCTGCACCTCCATCCTCGNTTACC
                      ____________________________________________________________
consensus             CATATATCACTCATCTGGAATGCCTCAAAATGCACATCTGCACCTCCATCCTCGNTTACC
 
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rJMFF022K16-          TCGAGNTTAACCATGGCTGTCANCCACTCCTTCNACTCGNCCTCCCCGTGCAGCTCAGCA
                      ____________________________________________________________
consensus             TCGAGNTTAACCATGGCTGTCANCCACTCCTTCNACTCGNCCTCCCCGTGCAGCTCAGCA