Contig 011060:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF012H11+           GGAGGAACCGACTGTACATACACTCCCGTGTACACTGAGATAAAGCCAGTGAGAGTACC
rJMSF002A20+              GGAACCGACTGTACATACACTCCCGTGTACACTGAGATAAAGCCAGTGAGAGTACC
                      ____________________________________________________________
consensus              GGAGGAACCGACTGTACATACACTCCCGTGTACACTGAGATAAAGCCAGTGAGAGTACC
 
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rJMSF012H11+          ATTCCAAAAAGGATTGGGCCAAAAATTTTGCCAGCCTTCAGGAACTGGTGTTGACTTGGG
rJMSF002A20+          ATTCCAAAAAGGATTGGGCCAAAAATTTTGCCAGCCTTCAGGAACTGGTGTTGACTTGGG
                      ____________________________________________________________
consensus             ATTCCAAAAAGGATTGGGCCAAAAATTTTGCCAGCCTTCAGGAACTGGTGTTGACTTGGG
 
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rJMSF012H11+          CTTCTTTGACATAAATGACCTATCAAAGCCCATTCCTGGAGAAAATGCTTTCCCGCTAGT
rJMSF002A20+          CTTCTTTGACATAAATGACCTATCAAAGCCCATTCCTGGAGAAAATGCTTTCCCGCTAGT
                      ____________________________________________________________
consensus             CTTCTTTGACATAAATGACCTATCAAAGCCCATTCCTGGAGAAAATGCTTTCCCGCTAGT
 
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rJMSF012H11+          TATAGTAGCAGAGTCATGTGCATCAACTTCAGCGGATGAACAGCCTAATGAGCAACAGGC
rJMSF002A20+          TATAGTAGCAGAGTCATGTGCATCAACTTCAGCGGATGAACAGCCTAATGAGCAACAGGC
                      ____________________________________________________________
consensus             TATAGTAGCAGAGTCATGTGCATCAACTTCAGCGGATGAACAGCCTAATGAGCAACAGGC
 
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rJMSF012H11+          CAACAAACTCCCGAATGCACAGATCACGGAGGCTATTATAGAGAAGAACAACGAGGACCA
rJMSF002A20+          CAACAAACTCCCGAATGCACAGATCACGGAGGCTATTATAGAGAAGAACAACGAGGACCA
                      ____________________________________________________________
consensus             CAACAAACTCCCGAATGCACAGATCACGGAGGCTATTATAGAGAAGAACAACGAGGACCA
 
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rJMSF012H11+          CTTTCAAGTGAAAGTAATCAAGCAGATTTTATGGGTTGAGGGGGTCCGTTATGAGCTGCG
rJMSF002A20+          CTTTCAAGTGAAAGTAATCAAGCAGATTTTATGGGTTGAGGGGGTCCGTTATGAGCTGCG
                      ____________________________________________________________
consensus             CTTTCAAGTGAAAGTAATCAAGCAGATTTTATGGGTTGAGGGGGTCCGTTATGAGCTGCG
 
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rJMSF012H11+          AGAAATTTATGGAATTAGCAAACCAGATGAAGAAACCATCAATGATGACTCGGGAAAAGA
rJMSF002A20+          AGAAATTTATGGAATTAGCAAACCAGATGAAGAAACCATCAATGATGACTCGGGAAAAGA
                      ____________________________________________________________
consensus             AGAAATTTATGGAATTAGCAAACCAGATGAAGAAACCATCAATGATGACTCGGGAAAAGA
 
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rJMSF012H11+          GTGTGTCATTTGCATGACTGAACCGAAGGATACAGCAGTTTTGCCTTGTAGACATATGTG
rJMSF002A20+          GTGTGTCATTTGCATGACTGAACCGAAGGATACAGCAGTTTTGCCTTGTAGACATATGTG
                      ____________________________________________________________
consensus             GTGTGTCATTTGCATGACTGAACCGAAGGATACAGCAGTTTTGCCTTGTAGACATATGTG
 
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rJMSF012H11+          TTTATGCAGTGAGTGCGCCAAAACTTTGAGGCTTCAATCAAATAAGTGCCCAATATGCCG
rJMSF002A20+          TTTATGCAGTGAGTGCGCCAAAACTTTGAGGCTTCAATCAAATAAGTGCCCAATATGCCG
                      ____________________________________________________________
consensus             TTTATGCAGTGAGTGCGCCAAAACTTTGAGGCTTCAATCAAATAAGTGCCCAATATGCCG
 
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rJMSF012H11+          CCAACCCATTGAAGAACTTCTGGAGATTAAGGTTAACGAAGGTCCTAATGAAGCTTCGTA
rJMSF002A20+          CCAACCCATTGAAGAACTTCTGGAGATTAAGGTTAACGAAGGTCCTAATGAAGCTTCGTA
                      ____________________________________________________________
consensus             CCAACCCATTGAAGAACTTCTGGAGATTAAGGTTAACGAAGGTCCTAATGAAGCTTCGTA
 
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rJMSF012H11+          GCATCAAAATAAGCTCGGATATGGCAAGGCAAAATCTGTGTATATGTGTCTGCAAAAGAA
rJMSF002A20+          GCATCAAAATAAGCTCGGATATGGCAAGGCAAAATCTGTGTATATGTGTCTGCAAAAGAA
                      ____________________________________________________________
consensus             GCATCAAAATAAGCTCGGATATGGCAAGGCAAAATCTGTGTATATGTGTCTGCAAAAGAA
 
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rJMSF012H11+          TAATAGTTGGCGTTAGCCCGTTTTCATCATAGTTTTGTAACCAGGTGCCTTATCAAAT  
rJMSF002A20+          TAATAGTTGGCGTTAGCCCGTTTTCATCATAGTTTTGTAACCAGGTGCCTTATCAAATTC
rJMFF022H14+                                                                 AATTC
                      ____________________________________________________________
consensus             TAATAGTTGGCGTTAGCCCGTTTTCATCATAGTTTTGTAACCAGGTGCCTTATCAAATTC
 
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rJMSF002A20+          ACCAGGGATTGTATATAATTTATGAATAAGAAAGTTTTTCCAAATATCTTCATATTCTT 
rJMFF022H14+          ACCAGGGATTGTATATAATTTATGAATAAGAAAGGTTTTCCAAATATCTTCATATTCTTT
                      ____________________________________________________________
consensus             ACCAGGGATTGTATATAATTTATGAATAAGAAAGTTTTTCCAAATATCTTCATATTCTTT
 
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rJMFF022H14+          CTGGTTTGACATCCTTTTGAAACAGTTTCATCTTTCACCTTGGGCATGTTTTCTTATAAT
                      ____________________________________________________________
consensus             CTGGTTTGACATCCTTTTGAAACAGTTTCATCTTTCACCTTGGGCATGTTTTCTTATAAT