Contig 011053:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008G09Sequence458001585 (4)ref|XP_009767883.1|2e-41PREDICTED: probable polygalacturonase [Nicotiana sylvestris]450011053 (4)ref|XP_009762711.1|3e-59PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris]
JMFF021E18Sequence515001585 (4)ref|XP_009599780.1|4e-58PREDICTED: probable polygalacturonase isoform X1 [Nicotiana tomentosiformis]668011053 (4)ref|XP_009762711.1|1e-112PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris]
JMSF023L09Sequence665001585 (4)ref|XP_009767883.1|4e-43PREDICTED: probable polygalacturonase [Nicotiana sylvestris]800011053 (4)ref|XP_009762711.1|7e-151PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris]
JMSF036J24Sequence624001585 (4)ref|XP_009767883.1|2e-85PREDICTED: probable polygalacturonase [Nicotiana sylvestris]649011053 (4)ref|XP_009762711.1|2e-114PREDICTED: probable polygalacturonase isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF023L09+                         ATCAACCCAGATTTTTGTGCAAATGTGAGGATTGAGGACAACTAC
                      ____________________________________________________________
consensus                            ATCAACCCAGATTTTTGTGCAAATGTGAGGATTGAGGACAACTAC
 
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rJMSF023L09+          ATAGTATCTGGAGATGACTGTGTGGCAGTTAAAAGCGGTTGGGACGAATACGGTATTAAG
                      ____________________________________________________________
consensus             ATAGTATCTGGAGATGACTGTGTGGCAGTTAAAAGCGGTTGGGACGAATACGGTATTAAG
 
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rJMSF023L09+          TACGGCATGCCTACCAAGCAGTTGATCATCCGGCGACTCACCTGCATCTCGCCGTACAGC
rJMSF036J24+                                                              CGTACAGC
rJMFF021E18+                                                              CGTACAGC
                      ____________________________________________________________
consensus             TACGGCATGCCTACCAAGCAGTTGATCATCCGGCGACTCACCTGCATCTCGCCGTACAGC
 
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rJMSF023L09+          GCGGCGATAGCGCTGGGGAGTGAAATGTCCGGCGGGATTCAGGACGTTAGAGCCTCAGAT
rJMSF036J24+          GCGGCGATAGCGCTGGGGAGTGAAATGTCCGGCGGGATTCAGGACGTTAGAGCCTCAGAT
rJMFF021E18+          GCGGCGATAGCGCTGGGGAGTGAAATGTCCGGCGGGATTCAGGACGTTAGAGCCTCAGAT
                      ____________________________________________________________
consensus             GCGGCGATAGCGCTGGGGAGTGAAATGTCCGGCGGGATTCAGGACGTTAGAGCCTCAGAT
 
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rJMSF023L09+          ATCACGGCCATCAACACGGAGTCCGGCGTGAGGATCAAGACCGCCGTAGGCCGCGGCGGC
rJMSF036J24+          ATCACGGCCATCAACACGGAGTCCGGCGTGAGGATCAAGACCGCCGTAGGCCGCGGCGGC
rJMFF021E18+          ATCACGGCCATCAACACGGAGTCCGGCGTGAGGATCAAGACCGCCGTAGGCCGCGGCGGC
                      ____________________________________________________________
consensus             ATCACGGCCATCAACACGGAGTCCGGCGTGAGGATCAAGACCGCCGTAGGCCGCGGCGGC
 
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rJMSF023L09+          TTCGTCAAGGATATATACGTCAAGGGGATGACGCTTCACACCATGAAATGGGTGTTTTGG
rJMSF036J24+          TTCGTCAAGGATATATACGTCAAGGGGATGACGCTTCACACCATGAAATGGGTGTTTTGG
rJMFF021E18+          TTCGTCAAGGATATATACGTCAAGGGGATGACGCTTCACACCATGAAATGGGTGTTTTGG
                      ____________________________________________________________
consensus             TTCGTCAAGGATATATACGTCAAGGGGATGACGCTTCACACCATGAAATGGGTGTTTTGG
 
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rJMSF023L09+          ATGACGGGGAACTACGGCTCTCATGCCGACAATAATTACGACCCCAACGCGTTGCCAGAG
rJMSF036J24+          ATGACGGGGAACTACGGCTCTCATGCCGACAATAATTACGACCCCAACGCGTTGCCAGAG
rJMFF008G09+                                ATGCCGACAATAATTACGACCCCAACGCGTTGCCAGAG
rJMFF021E18+          ATGACGGGGAACTACGGCTCTCATGCCGACAATAATTACGACCCCAACGCGTTGCCAGAG
                      ____________________________________________________________
consensus             ATGACGGGGAACTACGGCTCTCATGCCGACAATAATTACGACCCCAACGCGTTGCCAGAG
 
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rJMSF023L09+          ATCAAAGGGATCAACTACAGAGACGTGGTGGCCGACAACGTGAAGATGGCCGCCCGCCTG
rJMSF036J24+          ATCAAAGGGATCAACTACAGAGACGTGGTGGCCGACAACGTGAAGATGGCCGCCCGCCTG
rJMFF008G09+          ATCAAAGGGATCAACTACAGAGACGTGGTGGCCGACAACGTGAAGATGGCCGCCCGCCTG
rJMFF021E18+          ATCAAAGGGATCAACTACAGAGACGTGGTGGCCGACAACGTGAAGATGGCCGCCCGCCTG
                      ____________________________________________________________
consensus             ATCAAAGGGATCAACTACAGAGACGTGGTGGCCGACAACGTGAAGATGGCCGCCCGCCTG
 
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rJMSF023L09+          GAGGGGATTTCCGGCGACCCCTTCACCGGAATCTGCATGTCCAATGTCACCATATCTATG
rJMSF036J24+          GAGGGGATTTCCGGCGACCCCTTCACCGGAATCTGCATGTCCAATGTCACCATATCTATG
rJMFF008G09+          GAGGGGATTTCCGGCGACCCCTTCACCGGAATCTGCATGTCCAATGTCACCATATCTATG
rJMFF021E18+          GAGGGGATTTCCGGCGACCCCTTCACCGGAATCTGCATGTCCAATGTCACCATATCTATG
                      ____________________________________________________________
consensus             GAGGGGATTTCCGGCGACCCCTTCACCGGAATCTGCATGTCCAATGTCACCATATCTATG
 
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rJMSF023L09+          GCACAGAAGGCCAAAAAGTATCCATGTACCTGTACTGATATCCAGGGAACTACCAGTGGA
rJMSF036J24+          GCACAGAAGGCCAAAAAGTATCCATGGACCTGTACTGATATCCAGGGAACTACCAGTGGA
rJMFF008G09+          GCACAGAAGGCCAAAAAGTATCCATGGACCTGTACTGATATCCAGGGAACTACCAGTGGA
rJMFF021E18+          GCACAGAAGGCCAAAAAGTATCCATGGACCTGTACTGATATCCAGGGAACTACCAGTGGA
                      ____________________________________________________________
consensus             GCACAGAAGGCCAAAAAGTATCCATGGACCTGTACTGATATCCAGGGAACTACCAGTGGA
 
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rJMSF023L09+          GTGGTTCCAAAACCCTGCGAATCACTGCCTGATCAGGGCTCGGAAAAGCCTGAAATGTGT
rJMSF036J24+          GTGGTTCCAAAACCCTGCGAATCACTGCCTGATCAGGGCTCGGAAAAGCCTGAAATGTGT
rJMFF008G09+          GTGGTTCCAAAACCCTGCGAATCACTGCCTGATCAGGGCTCGGAAAAGCCTGAAATGTGT
rJMFF021E18+          GTGGTTCCAAAACCCTGCGAATCACTGCCTGATCAGGGCTCGGAAAAGCCTGAAATGTGT
                      ____________________________________________________________
consensus             GTGGTTCCAAAACCCTGCGAATCACTGCCTGATCAGGGCTCGGAAAAGCCTGAAATGTGT
 
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rJMSF023L09+          GATTTTCCGGCAGACAATCTGGAAATTGAAAACATAGAGTTCCAGAAATGTTCTTACAGA
rJMSF036J24+          GATTTTCCGGCAGACAATCTGGAAATTGAAAACATAGAGTTCCAGAAATGTTCTTACAGA
rJMFF008G09+          GATTTTCCGGCAGACAATCTGGAAATTGAAAACATAGAGTTCCAGAAATGTTCTTACAGA
rJMFF021E18+          GATTTTCCGGCAGACAATCTGGAAATTGAAAACATAGAGTTCCAGAAATGTTCTTACAGA
                      ____________________________________________________________
consensus             GATTTTCCGGCAGACAATCTGGAAATTGAAAACATAGAGTTCCAGAAATGTTCTTACAGA
 
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rJMSF023L09+          ATATATTATTGATGAGTGATCCATCACCCTCTATGGCCTCTGCTCAGATAATATATGTAT
rJMSF036J24+          ATATATTATTGATGAGTGATCCATCACCCTCTATGGCCTCTGCTCAGATAATATATGTAT
rJMFF008G09+          ATATATTATTGATGAGTGATCCATCACCCTCTATGGCCTCTGCTCAGATAATATATGTAT
rJMFF021E18+          ATATATTATTGATGAGTGATCCATCACCCTCTATGGCCTCTGCTCAGATAATATATGTAT
                      ____________________________________________________________
consensus             ATATATTATTGATGAGTGATCCATCACCCTCTATGGCCTCTGCTCAGATAATATATGTAT
 
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rJMSF023L09+          ACATAAGCTGCATAAATGTAATGATGTACCAAACT                         
rJMSF036J24+          ACATAAGCTGCATAAATGTAATGATGTACCAAACT                         
rJMFF008G09+          ACATAAGCTGCATAAATGTAATGATGTACCAAACTTCCTACTTTCAGCTATG        
rJMFF021E18+          ACATAAGCTGCATAAATGTAATGATGTACCAAACTTCCTACTTTCAGCTATGAATATATA
                      ____________________________________________________________
consensus             ACATAAGCTGCATAAATGTAATGATGTACCAAACTTCCTACTTTCAGCTATGAATATATA