Contig 011047:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020F19Sequence517011047 (3)ref|XP_008338810.1|5e-27PREDICTED: cytochrome b-c1 complex subunit 9-like [Malus domestica]484011047 (3)ref|XP_008338810.1|3e-27PREDICTED: cytochrome b-c1 complex subunit 9-like [Malus domestica]
JMSF029M10Sequence424011047 (3)ref|XP_008338810.1|2e-27PREDICTED: cytochrome b-c1 complex subunit 9-like [Malus domestica]241010023 (3)ref|XP_009768774.1|5e-40PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic i

Alignment

This contig is upended


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JMFF020F19+                                  TTTTTTTTTTGTCCAAAATNTCTATGATACTTGCTGA
rJMFF020F19-                                                                  CTGA
                      ____________________________________________________________
consensus                                    TTTTTTTTTTGTCCAAAATNTCTATGATACTTGCTGA
 
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JMFF020F19+           GTGATTAATTTGAGTTCAAACATTTCAAAGAGGAGAGAAAGAGAGCCGTTATTTTGAGGT
JMSF029M10+                                                                   AGGT
rJMFF020F19-          GTGATTAATTTGAGTTCAAACATTTCAAAGAGGAGAGAAAGAGAGCCGTTATTTTGAGGT
                      ____________________________________________________________
consensus             GTGATTAATTTGAGTTCAAACATTTCAAAGAGGAGAGAAAGAGAGCCGTTATTTTGAGGT
 
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JMFF020F19+           NGAAAAATGAGGGTATGGTGATTATATGAGTTNGAATATTACAGAACATNTGCAGAATGC
JMSF029M10+           CGAAAAATGAGGGTATGGNGATTATATGAGTTCGAATATTACAGAACATNTGCAGAATGC
rJMFF020F19-          CGAAAAATGAGGGTATGGTGATTATATGAGTTCGAATATTACAGAACATCTGCAGAATGC
                      ____________________________________________________________
consensus             CGAAAAATGAGGGTATGGTGATTATATGAGTTCGAATATTACAGAACATCTGCAGAATGC
 
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JMFF020F19+           AGTNTCAGAGCCATTATGACCCAATAAAATAGGTTTTATTCAAAATCAATTGAAAAAAAA
JMSF029M10+           AGTNTCAGAGCCNTTATGACCCAATAAAATAGGTTTTATTCAAAATCAATTGAAAAAAAA
rJMFF020F19-          AGTCTCAGAGCCATTATGACCCAATAAAATAGGTTTTATTCAAAATCAATTGAAAAAAAA
                      ____________________________________________________________
consensus             AGTCTCAGAGCCATTATGACCCAATAAAATAGGTTTTATTCAAAATCAATTGAAAAAAAA
 
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JMFF020F19+           AATGCCTCCATTCTGATTATGAGCAGTGTTCCTGCCAATTTATTCGGATGGCCTTTGTCC
JMSF029M10+           AATGCCTCCATTCTGATTATGAGCAGTGTTCCTGCCAATTTATTCGGATGGCCTTTGTCC
rJMFF020F19-          AATGCCTCCATTCTGATTATGAGCAGTGTTCCTGCCAATTTATTCGGATGGCCTTTGTCC
                      ____________________________________________________________
consensus             AATGCCTCCATTCTGATTATGAGCAGTGTTCCTGCCAATTTATTCGGATGGCCTTTGTCC
 
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JMFF020F19+           CAAAACTGGAATATCCTCGTAACGCTTCCCAACATTGTTCTGCTCCCAGAGCCTCTTAAC
JMSF029M10+           CAAAACTGGAATATCCTCGTAACGCTTCCCAACATTGTTCTGCTCCCAGAGCCTCTTAAC
rJMFF020F19-          CAAAACTGGAATATCCTCGTAACGCTTCCCAACATTGTTCTGCTCCCANAGCCTCTTAAC
                      ____________________________________________________________
consensus             CAAAACTGGAATATCCTCGTAACGCTTCCCAACATTGTTCTGCTCCCAGAGCCTCTTAAC
 
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JMFF020F19+           TCCATAGTCCACCGCCCTTTCGCCGATGAAAGCTCCGGCGATTACGAAGGTAACGTAGAC
JMSF029M10+           TCCATAGTCCACCGCCCTTTCGCCGATGAAAGCTCCGGCGATTACGAAGGTAACGTAGAC
rJMFF020F19-          TCCATAGTCCACCGCCCTTTCGCCGATGAAAGCTCCGGCGATTACGAAGGTAACGTANAC
                      ____________________________________________________________
consensus             TCCATAGTCCACCGCCCTTTCGCCGATGAAAGCTCCGGCGATTACGAAGGTAACGTAGAC
 
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JMFF020F19+           AGAGTTGCGGCGCATGATGACTCTGTAAAGGCCTTCGAGAAGGCCGCCGCCACTCCTCCG
JMSF029M10+           AGAGTTGCGGCGCATGATGACTCTGTAAAGGCCTTCGAGAAGGCCGCCGCCACTCCTCCG
rJMFF020F19-          AGAGTTGCGGCGCATGATGACTCTGTAAAGGCCTTCGAGAAGGCCGCCGCCACTCCTCCG
                      ____________________________________________________________
consensus             AGAGTTGCGGCGCATGATGACTCTGTAAAGGCCTTCGAGAAGGCCGCCGCCACTCCTCCG
 
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JMFF020F19+           AGCTGCCGCCGATGATTCCATTGCTCTGCCGTGTGGAGAATCTCAAAATATGAGTTTGAT
JMSF029M10+           AGCTGCCGCCGATGATTCCATTGCTCTGCCGTGTGGAGAATCTCAAAA            
rJMFF020F19-          AGCTGCCGCCGATGATTCCATTGCTCTGCCGTGTGGAGAATCTCAAAATATGAGTTTGAT
                      ____________________________________________________________
consensus             AGCTGCCGCCGATGATTCCATTGCTCTGCCGTGTGGAGAATCTCAAAATATGAGTTTGAT