Contig 011042:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019K05Sequence542019522ref|XP_009617919.1|3e-40PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X4 [Nicotiana t758011042 (2)ref|XP_009771461.1|2e-50PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Nicotiana s
JMSF028K21Sequence704018943ref|XP_009617919.1|5e-77PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X4 [Nicotiana t639011042 (2)ref|XP_009771461.1|2e-32PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Nicotiana s

Alignment

This contig is upended


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rJMFF019K05+                                ATCCATCCAATTGATGGATGATGGAAATGAAAAGTCTG
                      ____________________________________________________________
consensus                                   ATCCATCCAATTGATGGATGATGGAAATGAAAAGTCTG
 
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rJMSF028K21+                                                                     T
rJMFF019K05+          AAGTGGTGGCTGTGTCTGTCGACCCCAATTTTGCTGGTTATCTCTATTCTGATTATCTTT
                      ____________________________________________________________
consensus             AAGTGGTGGCTGTGTCTGTCGACCCCAATTTTGCTGGTTATCTCTATTCTGATTATCTTT
 
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rJMSF028K21+          CAGTAGAACATGGAAAAAAGGAGTCTTCATCCATTATGCTAAAGAGAAGCAAGAGAAAAT
rJMFF019K05+          CAGTAGAACATGGAAAAAAGGAGTCTTCATCCATTATGCTAAAGAGAAGCAAGAGAAAAT
                      ____________________________________________________________
consensus             CAGTAGAACATGGAAAAAAGGAGTCTTCATCCATTATGCTAAAGAGAAGCAAGAGAAAAT
 
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rJMSF028K21+          TTGCCAACCTTGATGAATTAGCTGCTGTGTGCATGGCAATGGAAAATGTAATCATTCTAA
rJMFF019K05+          TTGCCAACCTTGATGAATTAGCTGCTGTGTGCATGGCAATGGAAAATGTAATCATTCTAA
                      ____________________________________________________________
consensus             TTGCCAACCTTGATGAATTAGCTGCTGTGTGCATGGCAATGGAAAATGTAATCATTCTAA
 
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rJMSF028K21+          ATGGGTTGGAATGTAAGATGGCTTCCAATTCATCTAAGATCTCGTATGTCCTTGATACAG
rJMFF019K05+          ATGGGTTGGAATGTAAGATGGCTTCCAATTCATCTAAGATCTCGTATGTCCTTGATACAG
                      ____________________________________________________________
consensus             ATGGGTTGGAATGTAAGATGGCTTCCAATTCATCTAAGATCTCGTATGTCCTTGATACAG
 
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rJMSF028K21+          AGGACGTCTTTATCCGTTGTGGGAGGAAAATGAAGGTATCAGGTGAAAGTTTGTCATCCC
rJMFF019K05+          AGGACGTCTTTATCCGTTGTGGGAGGAAAATGAAGGTATCAGGTGAAAGTTTGTCATCCC
                      ____________________________________________________________
consensus             AGGACGTCTTTATCCGTTGTGGGAGGAAAATGAAGGTATCAGGTGAAAGTTTGTCATCCC
 
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rJMSF028K21+          ATGACCGTGCTAGAGTAGAAAGGTTTCATCGTCTTTTGACATCATCATTATGATACACTG
rJMFF019K05+          ATGACCGTGCTAGAGTAGAAAGGTTTCATCGTCTTTTGACATCATCATTATGATACACTG
                      ____________________________________________________________
consensus             ATGACCGTGCTAGAGTAGAAAGGTTTCATCGTCTTTTGACATCATCATTATGATACACTG
 
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rJMSF028K21+          TCCTATAATCAAGGTAACAATACTTGATACGCGGTTGAAGAAGTTGACCGCGATAGTTGC
rJMFF019K05+          TCCTATAATCAAGGTAACAATACTTGATACGCGGTTGAAGAAGTTGACCGCGATAGTTGC
                      ____________________________________________________________
consensus             TCCTATAATCAAGGTAACAATACTTGATACGCGGTTGAAGAAGTTGACCGCGATAGTTGC
 
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rJMSF028K21+          ACAACACCAGAGTTGATTCTCTCAACTGTACCATCTTGTCAGTTCATGGTAATGGCATTT
rJMFF019K05+          ACAACACCAGAGTTGATTCTCTCAACTGTACCATCTTGTCAGTTCATGGTAATGGCATTT
                      ____________________________________________________________
consensus             ACAACACCAGAGTTGATTCTCTCAACTGTACCATCTTGTCAGTTCATGGTAATGGCATTT
 
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rJMSF028K21+          AAGCCATTTTGTATTGTAAATATGGTTTGCTTCATGGTAGATTGTCAATTGTAGAGTCGC
rJMFF019K05+          AAGCCATTTTGTATTGTAAATATGGTTTGCTTCATGGTAGATTGTCAATTGTAGAGTCGC
                      ____________________________________________________________
consensus             AAGCCATTTTGTATTGTAAATATGGTTTGCTTCATGGTAGATTGTCAATTGTAGAGTCGC
 
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rJMSF028K21+          GTTCATTTTCCCCGCATCGTTTCTGGGATCTCCGAAAACCCTCCCCCCATTGGATTCTTT
rJMFF019K05+          GTTCATTTTCCCCGCATCGTTTCTGGGATCTCCGAAAACCCTCCCCCCATTGGATTCTTT
                      ____________________________________________________________
consensus             GTTCATTTTCCCCGCATCGTTTCTGGGATCTCCGAAAACCCTCCCCCCATTGGATTCTTT
 
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rJMSF028K21+          CTGTAACTGGTTTTTTCTTCTATTGTAAGCTAGAAGAGTTTTTTCGTTTCTCTAGCAAAC
rJMFF019K05+          CTGTAACTGGTTTTTTCTTCTATTGTAAGCTAGAAGAGTTTTTTCGTTTCTCTAGCAAAC
                      ____________________________________________________________
consensus             CTGTAACTGGTTTTTTCTTCTATTGTAAGCTAGAAGAGTTTTTTCGTTTCTCTAGCAAAC
 
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rJMSF028K21+          GTATTGTTGCTTGCTAGAGTTATGTAAACGAAG                           
rJMFF019K05+          GTATTGTTGCTTGCTAGAGTTATGTAAACGAAGTACCCTTTTATTGTTAAAATAGTATAG
                      ____________________________________________________________
consensus             GTATTGTTGCTTGCTAGAGTTATGTAAACGAAGTACCCTTTTATTGTTAAAATAGTATAG