Contig 011039:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF020G08+                                              AGCACAAACATGTTTAATGGATTT
rJMFF018G17+                                                              ATGGATTT
                      ____________________________________________________________
consensus                                                 AGCACAAACATGTTTAATGGATTT
 
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rJMSF020G08+          AGCGGAAATGACACTGTTAATGTGCGAAATGACAAGGCAGGTGCATCTACTAACCATGGA
rJMFF018G17+          AGCGGAAATGACACTGTTAATGTGCGAAATGACAAGGCAGGTGCATCTACTAA-CATGGA
                      ____________________________________________________________
consensus             AGCGGAAATGACACTGTTAATGTGCGAAATGACAAGGCAGGTGCATCTACTAACCATGGA
 
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rJMSF020G08+          TTTTTTCCGTTTCGAGACATCAGACAATGACAATCCATTTGGGAACAACAGGCCAATACC
rJMFF018G17+          TTTTTTCCGTTTCGAGACATCAGACAATGACAATCCATTTGGGAACAACAGGCCAATACC
                      ____________________________________________________________
consensus             TTTTTTCCGTTTCGAGACATCAGACAATGACAATCCATTTGGGAACAACAGGCCAATACC
 
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rJMSF020G08+          TGAATGGGCAGCATGGGGAGATGTCTCATATCTACAAGGTGGTAGATCCAGTGTGAATCC
rJMFF018G17+          TGAATGGGCAGCATGGGGAGATGTCTCATATCTACAAGGTGGTAGATCCAGTGTGAATCC
                      ____________________________________________________________
consensus             TGAATGGGCAGCATGGGGAGATGTCTCATATCTACAAGGTGGTAGATCCAGTGTGAATCC
 
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rJMSF020G08+          TTTTCTTGATGATTACAGTGATGACTGCAATCATGGCAATCCAGCAGCAACCACTGCTGT
rJMFF018G17+          TTTTCTTGATGATTACAGTGATGACTGCAATCATGGCAATCCAGCAGCAACCACTGCTGT
                      ____________________________________________________________
consensus             TTTTCTTGATGATTACAGTGATGACTGCAATCATGGCAATCCAGCAGCAACCACTGCTGT
 
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rJMSF020G08+          GTCTCCTCCCCTTAGTTCTACTTCCAATGGAGAAACTATTGTTCCAAATGGTGCCAATTC
rJMFF018G17+          GTCTCCTCCCCTTAGTTCTACTTCCAATGGAGAAACTATTGTTCCAAATGGTGCCAATTC
                      ____________________________________________________________
consensus             GTCTCCTCCCCTTAGTTCTACTTCCAATGGAGAAACTATTGTTCCAAATGGTGCCAATTC
 
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rJMSF020G08+          TACTCATAGAGGCACCACAGTTCCTTCTTTGTTCGAAGAGGATGTTGAGTTTGTTGGCGT
rJMFF018G17+          TACTCATAGAGGCACCACAGTTCCTTCTTTGTTCGAAGAGGATGTTGAGTTTGTTGGCGT
                      ____________________________________________________________
consensus             TACTCATAGAGGCACCACAGTTCCTTCTTTGTTCGAAGAGGATGTTGAGTTTGTTGGCGT
 
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rJMSF020G08+          GGAACTAGAGGGTACAGAGAAGGCAATGGAACATGCCCTTAAGGAGGGGATTGTAGGGGA
rJMFF018G17+          GGAACTAGAGGGTACAGAGAAGGCAATGGAACATGCCCTTAAGGAGGGGATTGTAGGGGA
                      ____________________________________________________________
consensus             GGAACTAGAGGGTACAGAGAAGGCAATGGAACATGCCCTTAAGGAGGGGATTGTAGGGGA
 
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rJMSF020G08+          AGCGGCACCATTGAAAAAGAGCCTCATACACAAGTTGCCAGAAAATGAGAATACAGAAGA
rJMFF018G17+          AGCGGCACCATTGAAAAAGAGCCTCATACACAAGTTGCCAGAAAATGAGAATACAGAAGA
                      ____________________________________________________________
consensus             AGCGGCACCATTGAAAAAGAGCCTCATACACAAGTTGCCAGAAAATGAGAATACAGAAGA
 
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rJMSF020G08+          TAGTGGAGCAGGTATAAAAGAGTTCAATGATGCAAATTATTGGAGAGTTGATCATGAGGT
rJMFF018G17+          TAGTGGAGCAGGTATAAAAGAGTTCAATGATGCAAATTATTGGAGAGTTGATCATGAGGT
                      ____________________________________________________________
consensus             TAGTGGAGCAGGTATAAAAGAGTTCAATGATGCAAATTATTGGAGAGTTGATCATGAGGT
 
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rJMSF020G08+          GGCAGTGTTGGAATAAGAGGAGGAATTTGATTTGAGTGAGTCTGGAGATCTGGGCTGCTA
rJMFF018G17+          GGCAGTGTTGGAATAAGAGGAGGAATTTGATTTGAGTGAGTCTGGAGATCTGGGCTGCTA
                      ____________________________________________________________
consensus             GGCAGTGTTGGAATAAGAGGAGGAATTTGATTTGAGTGAGTCTGGAGATCTGGGCTGCTA
 
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rJMSF020G08+          ATGGGGATCCGGTTTCAGTAGGGCAGGTGAGAGTTATATTATGCAGAAGACATGTACAGT
rJMFF018G17+          ATGGGGATCCGGTTTCAGTAGGGCAGGTGAGAGTTATATTATGCAGAAGACATGTACAGT
                      ____________________________________________________________
consensus             ATGGGGATCCGGTTTCAGTAGGGCAGGTGAGAGTTATATTATGCAGAAGACATGTACAGT
 
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rJMSF020G08+          TGAATCTTTGTTCCAATTTGGATCTGATCGAAAGATGATAGGCTAATGTTTGTTGTAGAC
rJMFF018G17+          TGAATCTTTGTTCCAATTTGGATCTGATCGAAAGATGATAGGCTAATGTTTGTTGTAGAC
                      ____________________________________________________________
consensus             TGAATCTTTGTTCCAATTTGGATCTGATCGAAAGATGATAGGCTAATGTTTGTTGTAGAC
 
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rJMSF020G08+          TTTGATGTCTATACTCTTAGGTCTGTATTGTCGTCACCAAATTCTTGATCCCT       
rJMFF018G17+          TTTGATGTCTATACTCTTAGGTCTGTATTGTCGTCACCAAATTCTTGATCCCTTCTCTTA
                      ____________________________________________________________
consensus             TTTGATGTCTATACTCTTAGGTCTGTATTGTCGTCACCAAATTCTTGATCCCTTCTCTTA