Contig 011036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001P18Sequence521005877 (2)ref|XP_002314066.1|1e-05hypothetical protein POPTR_0009s05960g [Populus trichocarpa] gb|EEE88021.1| hypo723011036 (4)ref|XP_006345387.1|291PREDICTED: uncharacterized protein LOC102596969 [Solanum tuberosum]
JMFF018B17Sequence555005877 (2)ref|XP_009764564.1|1e-15PREDICTED: pheophytinase, chloroplastic-like [Nicotiana sylvestris]782011036 (4)ref|XP_006345387.1|282PREDICTED: uncharacterized protein LOC102596969 [Solanum tuberosum]
JMFN017J13Sequence441011036 (4)ref|XP_009602379.1|2e-56PREDICTED: pheophytinase, chloroplastic-like [Nicotiana tomentosiformis]
JMFN017J15Sequence467011036 (4)ref|XP_009602379.1|9e-36PREDICTED: pheophytinase, chloroplastic-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF001P18+ TTAGAAATATCGTGAAGCTTTTATGGC
rJMFF018B17+ GGC
                      ____________________________________________________________
consensus TTAGAAATATCGTGAAGCTTTTATGGC
 
. : . : . : . : . : . :
rJMFF001P18+ AGAAAATCAGTGATCCCGAAAGCATTGCAGAGGTTCTAAAACAGGTCTATGCAGATCACT
rJMFF018B17+ AGAAAATCAGTGATCCCGAAAGCATTGCAGAGGTTCTAAAACAGGTCTATGCAGATCACT
                      ____________________________________________________________
consensus AGAAAATCAGTGATCCCGAAAGCATTGCAGAGGTTCTAAAACAGGTCTATGCAGATCACT
 
. : . : . : . : . : . :
rJMFF001P18+ CGATAAATGTGGATGAAGTGTTCTCTCATATAATCGAGACAACAAAGCATCCCGCTGCAG
rJMFF018B17+ CGATAAATGTGGATGAAGTGTTCTCTCATATAATCGAGACAACAAAGCATCCCGCTGCAG
                      ____________________________________________________________
consensus CGATAAATGTGGATGAAGTGTTCTCTCATATAATCGAGACAACAAAGCATCCCGCTGCAG
 
. : . : . : . : . : . :
rJMFF001P18+ CTGCATCCTTAGCCTCGATAATGTTTGCTCCCGGGAGTCAATTGTCGTTCAAAGAGGCTC
rJMFF018B17+ CTGCATCCTTAGCCTCGATAATGTTTGCTCCCGGGAGTCAATTGTCGTTCAAAGAGGCTC
                      ____________________________________________________________
consensus CTGCATCCTTAGCCTCGATAATGTTTGCTCCCGGGAGTCAATTGTCGTTCAAAGAGGCTC
 
. : . : . : . : . : . :
JMFN017J13- GAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
JMFN017J15- GGAAGGAAGATCCGT
rJMFF001P18+ TCTCGGGGTGTCAAGAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
rJMFF018B17+ TCTCGGGGTGTCAAGAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
                      ____________________________________________________________
consensus TCTCGGGGTGTCAAGAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
 
. : . : . : . : . : . :
JMFN017J13- GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
JMFN017J15- GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
rJMFF001P18+ GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
rJMFF018B17+ GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
                      ____________________________________________________________
consensus GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
 
. : . : . : . : . : . :
JMFN017J13- AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
JMFN017J15- AGATTAGCCCCGCCGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
rJMFF001P18+ AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
rJMFF018B17+ AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
                      ____________________________________________________________
consensus AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
 
. : . : . : . : . : . :
JMFN017J13- TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
JMFN017J15- TGCGGGGATGGATCACAACCCTGGAGTCGAGCGGCTTTGGTGACGCTACCCCTGCTCGAT
rJMFF001P18+ TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
rJMFF018B17+ TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
                      ____________________________________________________________
consensus TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
 
. : . : . : . : . : . :
JMFN017J13- AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
JMFN017J15- AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
rJMFF001P18+ AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
rJMFF018B17+ AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
                      ____________________________________________________________
consensus AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
 
. : . : . : . : . : . :
JMFN017J13- AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCACTGGGAAAGGTTTGGT
JMFN017J15- AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTTCCACTGGGAAAGGTTTGGT
rJMFF001P18+ AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCAGTGGGAAAGGTTTGGT
rJMFF018B17+ AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCAGTGGGAAAGGTTTGGT
                      ____________________________________________________________
consensus AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCAGTGGGAAAGGTTTGGT
 
. : . : . : . : . : . :
JMFN017J13- TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTATGAAGAACATAAANA
JMFN017J15- TTTTACGTTAAATCTCCGCTCAAGACAGAAGGCCTAAAACTCCTACGAAGAACATAGTTA
rJMFF001P18+ TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTAGGAAGAACATAGTTA
rJMFF018B17+ TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTAGGAAGAACATAGTTA
                      ____________________________________________________________
consensus TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTAGGAAGAACATAGTTA
 
. : . : . : . : . : . :
JMFN017J13- CATTCTTGTTATGTTACATTCTTGTTTGATGTAAT
JMFN017J15- CATTCTTGTTATGACACATTCTTGTTTGATGTAATCGTAATTGT-ATATAGAAAATGCAC
rJMFF001P18+ CATTCTTGTTATGTTACATTCTTGTTTGATGTAATTGTAATTGTAATATAGAAAATGCAC
rJMFF018B17+ CATTCTTGTTATGTTACATTCTTGTTTGATGTAATTGTAATTGTAATATAGAAAATGCAC
                      ____________________________________________________________
consensus CATTCTTGTTATGTTACATTCTTGTTTGATGTAATTGTAATTGTAATATAGAAAATGCAC
 
. : . : . : . : . : . :
JMFN017J15- AGGCACAGGGTATACATA
rJMFF001P18+ AGGCACAGGGGATACATA
rJMFF018B17+ AGGCACAGGGGATACATATGTAAAAGTACAGTTGAAAAATGAATGCACTTAGTAATTTGG
                      ____________________________________________________________
consensus AGGCACAGGGGATACATATGTAAAAGTACAGTTGAAAAATGAATGCACTTAGTAATTTGG
 
. : . : . : . : . : . :
rJMFF018B17+ GAGGTGTATTTTTAGTATTTGCACAGTTTTTGAACCACAATTTTACATATTATGAGAAAT
                      ____________________________________________________________
consensus GAGGTGTATTTTTAGTATTTGCACAGTTTTTGAACCACAATTTTACATATTATGAGAAAT