Contig 011036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001P18Sequence521005877 (2)ref|XP_002314066.1|1e-05hypothetical protein POPTR_0009s05960g [Populus trichocarpa] gb|EEE88021.1| hypo723011036 (4)ref|XP_006345387.1|291PREDICTED: uncharacterized protein LOC102596969 [Solanum tuberosum]
JMFF018B17Sequence555005877 (2)ref|XP_009764564.1|1e-15PREDICTED: pheophytinase, chloroplastic-like [Nicotiana sylvestris]782011036 (4)ref|XP_006345387.1|282PREDICTED: uncharacterized protein LOC102596969 [Solanum tuberosum]
JMFN017J13Sequence441011036 (4)ref|XP_009602379.1|2e-56PREDICTED: pheophytinase, chloroplastic-like [Nicotiana tomentosiformis]
JMFN017J15Sequence467011036 (4)ref|XP_009602379.1|9e-36PREDICTED: pheophytinase, chloroplastic-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF001P18+                                           TTAGAAATATCGTGAAGCTTTTATGGC
rJMFF018B17+                                                                   GGC
                      ____________________________________________________________
consensus                                              TTAGAAATATCGTGAAGCTTTTATGGC
 
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rJMFF001P18+          AGAAAATCAGTGATCCCGAAAGCATTGCAGAGGTTCTAAAACAGGTCTATGCAGATCACT
rJMFF018B17+          AGAAAATCAGTGATCCCGAAAGCATTGCAGAGGTTCTAAAACAGGTCTATGCAGATCACT
                      ____________________________________________________________
consensus             AGAAAATCAGTGATCCCGAAAGCATTGCAGAGGTTCTAAAACAGGTCTATGCAGATCACT
 
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rJMFF001P18+          CGATAAATGTGGATGAAGTGTTCTCTCATATAATCGAGACAACAAAGCATCCCGCTGCAG
rJMFF018B17+          CGATAAATGTGGATGAAGTGTTCTCTCATATAATCGAGACAACAAAGCATCCCGCTGCAG
                      ____________________________________________________________
consensus             CGATAAATGTGGATGAAGTGTTCTCTCATATAATCGAGACAACAAAGCATCCCGCTGCAG
 
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rJMFF001P18+          CTGCATCCTTAGCCTCGATAATGTTTGCTCCCGGGAGTCAATTGTCGTTCAAAGAGGCTC
rJMFF018B17+          CTGCATCCTTAGCCTCGATAATGTTTGCTCCCGGGAGTCAATTGTCGTTCAAAGAGGCTC
                      ____________________________________________________________
consensus             CTGCATCCTTAGCCTCGATAATGTTTGCTCCCGGGAGTCAATTGTCGTTCAAAGAGGCTC
 
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JMFN017J13-                         GAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
JMFN017J15-                                                        GGAAGGAAGATCCGT
rJMFF001P18+          TCTCGGGGTGTCAAGAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
rJMFF018B17+          TCTCGGGGTGTCAAGAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
                      ____________________________________________________________
consensus             TCTCGGGGTGTCAAGAAAACAATGTACCCATATGCCTCGTTTACGGGAAGGAAGATCCGT
 
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JMFN017J13-           GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
JMFN017J15-           GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
rJMFF001P18+          GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
rJMFF018B17+          GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
                      ____________________________________________________________
consensus             GGGTGACGCCTTATTGGGGCTTTCGGGTCAAGAGGCGAATGCCCGAGGCTCCATATTACG
 
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JMFN017J13-           AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
JMFN017J15-           AGATTAGCCCCGCCGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
rJMFF001P18+          AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
rJMFF018B17+          AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
                      ____________________________________________________________
consensus             AGATTAGCCCCGCAGGTCACTGCCCCCACGACGAAGTCCCAGAGGTCGTGAACTTTCTTT
 
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JMFN017J13-           TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
JMFN017J15-           TGCGGGGATGGATCACAACCCTGGAGTCGAGCGGCTTTGGTGACGCTACCCCTGCTCGAT
rJMFF001P18+          TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
rJMFF018B17+          TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
                      ____________________________________________________________
consensus             TGCGGGGATGGATCAGAAGCCTGGAGTCGAGCGGC-TTGGTGACGCTACCCCTGCTCGAT
 
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JMFN017J13-           AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
JMFN017J15-           AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
rJMFF001P18+          AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
rJMFF018B17+          AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
                      ____________________________________________________________
consensus             AGCCCAGAGTGCGCTGCCTTCGACATTTCTAGGGAGGTGGAATTCATCCGAGGAGGACTG
 
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JMFN017J13-           AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCACTGGGAAAGGTTTGGT
JMFN017J15-           AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTTCCACTGGGAAAGGTTTGGT
rJMFF001P18+          AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCAGTGGGAAAGGTTTGGT
rJMFF018B17+          AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCAGTGGGAAAGGTTTGGT
                      ____________________________________________________________
consensus             AAGAAATCGGTAAATGTACAATTTTATGGATCCACAACGTCGCAGTGGGAAAGGTTTGGT
 
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JMFN017J13-           TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTATGAAGAACATAAANA
JMFN017J15-           TTTTACGTTAAATCTCCGCTCAAGACAGAAGGCCTAAAACTCCTACGAAGAACATAGTTA
rJMFF001P18+          TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTAGGAAGAACATAGTTA
rJMFF018B17+          TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTAGGAAGAACATAGTTA
                      ____________________________________________________________
consensus             TTTTACGTTAAATCTCTGCTCAAGACAGAAGGCCTAAAACTCCTAGGAAGAACATAGTTA
 
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JMFN017J13-           CATTCTTGTTATGTTACATTCTTGTTTGATGTAAT                         
JMFN017J15-           CATTCTTGTTATGACACATTCTTGTTTGATGTAATCGTAATTGT-ATATAGAAAATGCAC
rJMFF001P18+          CATTCTTGTTATGTTACATTCTTGTTTGATGTAATTGTAATTGTAATATAGAAAATGCAC
rJMFF018B17+          CATTCTTGTTATGTTACATTCTTGTTTGATGTAATTGTAATTGTAATATAGAAAATGCAC
                      ____________________________________________________________
consensus             CATTCTTGTTATGTTACATTCTTGTTTGATGTAATTGTAATTGTAATATAGAAAATGCAC
 
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JMFN017J15-           AGGCACAGGGTATACATA                                          
rJMFF001P18+          AGGCACAGGGGATACATA                                          
rJMFF018B17+          AGGCACAGGGGATACATATGTAAAAGTACAGTTGAAAAATGAATGCACTTAGTAATTTGG
                      ____________________________________________________________
consensus             AGGCACAGGGGATACATATGTAAAAGTACAGTTGAAAAATGAATGCACTTAGTAATTTGG
 
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rJMFF018B17+          GAGGTGTATTTTTAGTATTTGCACAGTTTTTGAACCACAATTTTACATATTATGAGAAAT
                      ____________________________________________________________
consensus             GAGGTGTATTTTTAGTATTTGCACAGTTTTTGAACCACAATTTTACATATTATGAGAAAT