Contig 011031:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017G15Sequence571003235 (3)ref|XP_010265997.1|8e-81PREDICTED: metal transporter Nramp6-like isoform X2 [Nelumbo nucifera]797011031 (3)emb|CDP20210.1|2e-92unnamed protein product [Coffea canephora]
JMFF037K16Sequence532003235 (3)ref|XP_010265997.1|8e-73PREDICTED: metal transporter Nramp6-like isoform X2 [Nelumbo nucifera]716011031 (3)emb|CDP20210.1|3e-83unnamed protein product [Coffea canephora]
JMFN017M13Sequence626011031 (3)emb|CDP20210.1|2e-76unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF017G15+                                                     CTCAGCTGCATTTCTGC
                      ____________________________________________________________
consensus                                                        CTCAGCTGCATTTCTGC
 
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rJMFF037K16+                                                              TGGCATCA
rJMFF017G15+          TTAAGGATTCTCTAGGGGAAATGGAGTTCAAAGCTTTATGCTGTGTCTTTGTTGGCATCA
                      ____________________________________________________________
consensus             TTAAGGATTCTCTAGGGGAAATGGAGTTCAAAGCTTTATGCTGTGTCTTTGTTGGCATCA
 
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rJMFF037K16+          GGTCAGAGTTCATCAGTCACAGGGACATTTGCTGGCCAGTATATAATGCAGGGGTTTTTG
JMFN017M13-                                    CATTTGCTGGCCAGTATATAATGCAGGGGTTTTTG
rJMFF017G15+          GGTCAGAGTTCATCAGTCACAGGGACATTTGCTGGCCAGTATATAATGCAGGGGTTTTTG
                      ____________________________________________________________
consensus             GGTCAGAGTTCATCAGTCACAGGGACATTTGCTGGCCAGTATATAATGCAGGGGTTTTTG
 
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rJMFF037K16+          GATCTGAAAATGAAGCTATGGCTGCGAAATTTGCTCACCAGGTGCATAGCAATTGCGCCA
JMFN017M13-           GATCTGAAAATGAAGCTATGGCTGCGAAATTTGCTCACCAGGTGCATAGCAATTGCGCCA
rJMFF017G15+          GATCTGAAAATGAAGCTATGGCTGCGAAATTTGCTCACCAGGTGCATAGCAATTGCGCCA
                      ____________________________________________________________
consensus             GATCTGAAAATGAAGCTATGGCTGCGAAATTTGCTCACCAGGTGCATAGCAATTGCGCCA
 
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rJMFF037K16+          AGTTTAATGGTCTGCGTCATCGGCGGATCTTCTGGAGCTGGGAAGCTAATTATTATTGCT
JMFN017M13-           AGTTTAATGGTCTGCGTCATCGGCGGATCTTCTGGAGCTGGGAAGCTAATTATTATTGCT
rJMFF017G15+          AGTTTAATGGTCTGCGTCATCGGCGGATCTTCTGGAGCTGGGAAGCTAATTATTATTGCT
                      ____________________________________________________________
consensus             AGTTTAATGGTCTGCGTCATCGGCGGATCTTCTGGAGCTGGGAAGCTAATTATTATTGCT
 
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rJMFF037K16+          TCTATGATTTTATCATTTGAACTACCATTTGCACTGGTTCCTCTTCTTAGGTTTACCAGC
JMFN017M13-           TCTATGATTTTATCATTTGAACTACCATTTGCACTGGTTCCTCTTCTTAGGTTTACCAGC
rJMFF017G15+          TCTATGATTTTATCATTTGAACTACCATTTGCACTGGTTCCTCTTCTTAGGTTTACCAGC
                      ____________________________________________________________
consensus             TCTATGATTTTATCATTTGAACTACCATTTGCACTGGTTCCTCTTCTTAGGTTTACCAGC
 
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rJMFF037K16+          AGTGGAAGCAAAATGGGGCAGCATAAAAACTCTAAGATGGTAACAGTGATCACATGGCTA
JMFN017M13-           AGTGGAAGCAAAATGGGGCAGCATAAAAACTCTAAGATGGTAACAGTGATCACATGGCTA
rJMFF017G15+          AGTGGAAGCAAAATGGGGCAGCATAAAAACTCTAAGATGGTAACAGTGATCACATGGCTA
                      ____________________________________________________________
consensus             AGTGGAAGCAAAATGGGGCAGCATAAAAACTCTAAGATGGTAACAGTGATCACATGGCTA
 
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rJMFF037K16+          CTAGGATTCTGCTCAATTGGGGTCAACATCTATTTCTTAAGCAGAAGTTTGTTTGGGTGG
JMFN017M13-           CTAGGATTCTGCTCAATTGGGGTCAACATCTATTTCTTAAGCAGAAGTTTGTTTGGGTGG
rJMFF017G15+          CTAGGATTCTGCTCAATTGGGGTCAACATCTATTTCTTAAGCAGAAGTTTGTTTGGGTGG
                      ____________________________________________________________
consensus             CTAGGATTCTGCTCAATTGGGGTCAACATCTATTTCTTAAGCAGAAGTTTGTTTGGGTGG
 
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rJMFF037K16+          CTTACCAGCAAAAAGATGCCCAGGGCTGTATCCATCTTCTCCACAGTAATGATCTGTCCA
JMFN017M13-           CTTACCAGCAAAAAGATGCCCAGGGCTGTATCCATCTTCTCCACAGTAATGATCTGTCCA
rJMFF017G15+          CTTACCAGCAAAAAGATGCCCAGGGCTGTATCCATCTTCTCCACAGTAATGATCTGTCCA
                      ____________________________________________________________
consensus             CTTACCAGCAAAAAGATGCCCAGGGCTGTATCCATCTTCTCCACAGTAATGATCTGTCCA
 
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rJMFF037K16+          GTAATGGTGCTTTATGTTGCAATGCTGGCCTACTTGACGCTGAAGCCAGAAGCTACAAGC
JMFN017M13-           GTAATGGTGCTTTATGTTGCAATGCTGGCCTACTTGACGCTGAAGCCAGAAGCTACAAGC
rJMFF017G15+          GTAATGGTGCTTTATGTTGCAATGCTGGCCTACTTGACGCTGAAGCCAGAAGCTACAAGC
                      ____________________________________________________________
consensus             GTAATGGTGCTTTATGTTGCAATGCTGGCCTACTTGACGCTGAAGCCAGAAGCTACAAGC
 
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rJMFF037K16+          AAGAGTGTCCAATCTTCTGAAGCAAGTTCTACTGGGACTGTTGAAATGGAGCTAGAGCAA
JMFN017M13-           AAGAGTGTCCAATCTTCTGAAGCAAGTTCTACTGGGACTGTTGAAATGGAGCTAGAGCAA
rJMFF017G15+          AAGAGTGTCCAATCTTCTGAAGCAAGTTCTACTGGGACTGTTGAAATGGAGCTAGAGCAA
                      ____________________________________________________________
consensus             AAGAGTGTCCAATCTTCTGAAGCAAGTTCTACTGGGACTGTTGAAATGGAGCTAGAGCAA
 
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rJMFF037K16+          GGTGCTGACTTCAAAACTCCGATGTAGCTGATGAGATTTAGAAGGATGATCTAGTCCCTC
JMFN017M13-           GGTGCTGACTTCAAAACTCCGATGTAGCTGATGAGATTTAGAAGGATGATCTAGTCCCTC
rJMFF017G15+          GGTGCTGACTTCAAAACTCCGATGTAGCTGATGAGATTTAGAAGGATGATCTAGTCCCTC
                      ____________________________________________________________
consensus             GGTGCTGACTTCAAAACTCCGATGTAGCTGATGAGATTTAGAAGGATGATCTAGTCCCTC
 
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rJMFF037K16+          TGTAGGACACAAGTTCTTCACCATCCCCACCGCATTATATAATATTCTTCAGTAGTAATC
JMFN017M13-           TGTAGGACACAAGTTTTTCACCATCCCCACCGCATTATATAATATTCTTCA         
rJMFF017G15+          TGTAGGACACAAGTTCTTCACCATCCCCACCGCATTATATAATATTCTTCAGTAGTAATC
                      ____________________________________________________________
consensus             TGTAGGACACAAGTTCTTCACCATCCCCACCGCATTATATAATATTCTTCAGTAGTAATC
 
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rJMFF037K16+          AAAAGAATAAATTACAGTAAAGAATAAATCTGTAGTGACTTACAGGGG            
rJMFF017G15+          AAAAGAATAAATTACAGTAAAGAATAAATCTGTAGTGACTTACAGGGGTAAATTTCAACT
                      ____________________________________________________________
consensus             AAAAGAATAAATTACAGTAAAGAATAAATCTGTAGTGACTTACAGGGGTAAATTTCAACT