Contig 011026:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016N20Sequence521000897 (7)ref|XP_009600020.1|7e-44PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor739011026 (8)ref|XP_009793551.1|8e-105PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF017I20Sequence580000897 (7)ref|XP_009600020.1|4e-43PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor633011026 (8)ref|XP_009600023.1|4e-75PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF043N16Sequence637000897 (7)gb|AHL84161.1|9e-55geranyl pyrophosphate synthase [Nicotiana tabacum]569011026 (8)ref|XP_009600023.1|4e-77PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMFF051M21Sequence645000897 (7)ref|XP_009600020.1|2e-55PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor610011026 (8)ref|XP_009600023.1|7e-76PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF022F23Sequence692000897 (7)ref|XP_009600020.1|2e-27PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor758011026 (8)ref|XP_009600021.1|2e-114PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF023F20Sequence675022114ref|XP_006364882.1|2e-57PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [747011026 (8)ref|XP_009600021.1|2e-135PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF035I20Sequence675017888ref|XP_009600020.1|2e-60PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor754011026 (8)ref|XP_009793552.1|9e-111PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor
JMSF039K08Sequence673000897 (7)ref|XP_009600020.1|2e-20PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor744011026 (8)ref|XP_009793552.1|3e-102PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isofor

Alignment

This contig is upended


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rJMSF023F20+                                             TTTCCAGAGCTTGTGTAGCACTAGC
                      ____________________________________________________________
consensus                                                TTTCCAGAGCTTGTGTAGCACTAGC
 
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rJMSF023F20+          CTCTTTGAAGAACACAGAGGTTGTGTCATTGCTAGCAACAGTTGTCGAGCACCTTGTTAC
                      ____________________________________________________________
consensus             CTCTTTGAAGAACACAGAGGTTGTGTCATTGCTAGCAACAGTTGTCGAGCACCTTGTTAC
 
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rJMSF023F20+          TGGGGAAACAATGCAAATGACAACTAGTTCTGATCAACGTTGTAGCA-TGGAGTATTATA
rJMSF039K08+                    ATGCAAATGACAACTAGTTCTGATCAACGTTGTAGCATTGGAGTATTATA
rJMSF022F23+                  CCATGCAAATGACAACTAGTTCTGATCAACGTTGTAGCA-TGGAGTATTATA
rJMSF035I20+                    ATGCAAATGACAACTAGNTNTGATCAACGTTGTAGCA-TGGAGTATTATA
rJMFF016N20+                                                  TGTAGCA-TGGAGTATTATA
                      ____________________________________________________________
consensus             TGGGGAAACCATGCAAATGACAACTAGTTCTGATCAACGTTGTAGCA-TGGAGTATTATA
 
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rJMSF023F20+          TGCAGAAGACATATTATAAGACTGCATCACTGATTTCAAATAGTTGTAAAGCTATTGCCC
rJMSF039K08+          TGCAGAAGACATATTATAAGACTGCATCACTGATTTCAAATAGTTGTAAAGCTATTGCCC
rJMSF022F23+          TGCAGAAGACATATTATAAGACTGCATCACTGATTTCAAATAGTTGTAAAGCTATTGCCC
rJMSF035I20+          TGCAGAAGACATATTATAAGACTGCATCACTGATTTCAAATAGTTGTAAAGCTATTGCCC
rJMFF016N20+          TGCAGAAGACATATTATAAGACTGCATCACTGATTTCAAATAGTTGTAAAGCTATTGCCC
                      ____________________________________________________________
consensus             TGCAGAAGACATATTATAAGACTGCATCACTGATTTCAAATAGTTGTAAAGCTATTGCCC
 
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rJMSF023F20+          TTCTGGCTGGCCAAACTGCAGAAGTTTCTGTGATGGCATTTGAGTACGGAAAAAATCTGG
rJMFF043N16+                                       GTGATGGCATTTGAGTACGGAAAAAATCTGG
rJMFF051M21+                                       GTGATGGCATTTGAGTACGGAAAAAATCTGG
rJMSF039K08+          TTCTGGCTGGCCAAACTGCAGAAGTTTCTGTGATGGCATTTGAGTACGGAAAAAATCTGG
rJMSF022F23+          TTCTGGCTGGCCAAACTGCAGAAGTTTCTGTGATGGCATTTGAGTACGGAAAAAATCTGG
rJMSF035I20+          TTCTGGCTGGCCAAACTGCAGAAGTTTCTGTGATGGCATTTGAGTACGGAAAAAATCTGG
rJMFF017I20+                                      TGTGATGGCATTTGAGTACGGAAAAAATCTGG
rJMFF016N20+          TTCTGGCTGGCCAAACTGCAGAAGTTTCTGTGATGGCATTTGAGTACGGAAAAAATCTGG
                      ____________________________________________________________
consensus             TTCTGGCTGGCCAAACTGCAGAAGTTTCTGTGATGGCATTTGAGTACGGAAAAAATCTGG
 
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rJMSF023F20+          GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
rJMFF043N16+          GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
rJMFF051M21+          GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
rJMSF039K08+          GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
rJMSF022F23+          GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
rJMSF035I20+          GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
rJMFF017I20+          GACTGGCTTTTCAATTAATAGATGATGTTGTGGATTTCACTGGCACCTCAGCTACTCTNG
rJMFF016N20+          GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
                      ____________________________________________________________
consensus             GACTGGCTTTTCAATTAATAGATGATGTTCTGGATTTCACTGGCACCTCAGCTACTCTTG
 
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rJMSF023F20+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
rJMFF043N16+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
rJMFF051M21+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
rJMSF039K08+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
rJMSF022F23+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
rJMSF035I20+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
rJMFF017I20+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
rJMFF016N20+          GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
                      ____________________________________________________________
consensus             GGAAGGGATCATTATCTGATATTCGTCATGGAATTGTAACTGCTCCAATATTGTTTGCAA
 
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rJMSF023F20+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
rJMFF043N16+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
rJMFF051M21+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
rJMSF039K08+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
rJMSF022F23+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
rJMSF035I20+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
rJMFF017I20+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
rJMFF016N20+          TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
                      ____________________________________________________________
consensus             TGGAGGAATACCCTCAGCTGCGTGACGTTGTTGATCAGGGATTTGATGACCCTAGGAACG
 
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rJMSF023F20+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
rJMFF043N16+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
rJMFF051M21+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
rJMSF039K08+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
rJMSF022F23+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
rJMSF035I20+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
rJMFF017I20+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
rJMFF016N20+          TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
                      ____________________________________________________________
consensus             TGGATCTTGCACTGGAGTACCTTGGCAAGAGTCGTGGCATACAACGAACGAGAGAGCTGG
 
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rJMSF023F20+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
rJMFF043N16+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
rJMFF051M21+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
rJMSF039K08+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
rJMSF022F23+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
rJMSF035I20+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
rJMFF017I20+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGNNG
rJMFF016N20+          CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
                      ____________________________________________________________
consensus             CAACAAAGCACGCCAACCTGGCATCAGATGCTATCGATTCTCTCCCAGAGAGCGATGACG
 
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rJMSF023F20+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
rJMFF043N16+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
rJMFF051M21+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCGGGAGAA
rJMSF039K08+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
rJMSF022F23+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
rJMSF035I20+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
rJMFF017I20+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
rJMFF016N20+          AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
                      ____________________________________________________________
consensus             AAGATGTTCAAAGGTCAAGACGTGCACTAGTAGAACTGACTCAAAGAGTCATCACGAGAA
 
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rJMSF023F20+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
rJMFF043N16+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
rJMFF051M21+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
rJMSF039K08+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
rJMSF022F23+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
rJMSF035I20+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
rJMFF017I20+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
rJMFF016N20+          CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
                      ____________________________________________________________
consensus             CGAAATAGACAGGAAAAATCAGGTTCAGGCACGACGCTTTTTATTACTGTATTGCGGATT
 
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rJMSF023F20+          TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
rJMFF043N16+          TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
rJMFF051M21+          GTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
rJMSF039K08+          TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
rJMSF022F23+          TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
rJMSF035I20+          TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
rJMFF017I20+          TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
rJMFF016N20+          TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
                      ____________________________________________________________
consensus             TTGTTTTGTTTCTCCTTTAGTGTTGCTGTAATACAGGGGGGAATTTTTTTTCCCTAAATC
 
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rJMSF023F20+          ATT                                                         
rJMFF043N16+          ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAG  
rJMFF051M21+          ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAGAA
rJMSF039K08+          ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAGAA
rJMSF022F23+          ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAGAA
rJMSF035I20+          ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAGAA
rJMFF017I20+          ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAGAA
rJMFF016N20+          ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAGAA
                      ____________________________________________________________
consensus             ATTTGATCATTGTTTCTAACTGTTTCAATTTTGGCATACAATAATTATTTTGATGAAGAA
 
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rJMFF051M21+          AA                                                          
rJMSF039K08+          AATGCCCTGTGCTGTAATGCCAACTTCAT                               
rJMSF022F23+          AATGCCCTGTGCTGTAATGCCAACTTCATG                              
rJMSF035I20+          AATGCCCTGTGCTGTAATGCCAACTTCATG                              
rJMFF017I20+          AATGCCCTGTGCTGTAATGCCAACTTCATGTAAATCATTATCAGAACTTCTATAAGAAT 
rJMFF016N20+          AATGCCCTGTGCTGTAATGCCAACTTCATGTAAATCATTACCAGAACTTCTATAAGAATT
                      ____________________________________________________________
consensus             AATGCCCTGTGCTGTAATGCCAACTTCATGTAAATCATTATCAGAACTTCTATAAGAATT