Contig 011023:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015P15Sequence537008769 (2)ref|XP_006359095.1|2e-13PREDICTED: BTB/POZ domain-containing protein At1g30440-like [Solanum tuberosum]672011023 (2)ref|XP_009763589.1|3e-80PREDICTED: BTB/POZ domain-containing protein At1g30440 [Nicotiana sylvestris]
JMSF005L06Sequence417008769 (2)ref|XP_006359095.1|4e-14PREDICTED: BTB/POZ domain-containing protein At1g30440-like [Solanum tuberosum]486011023 (2)ref|XP_009763589.1|1e-42PREDICTED: BTB/POZ domain-containing protein At1g30440 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF015P15+                                                          TGGACTGCCCAG
                      ____________________________________________________________
consensus                                                             TGGACTGCCCAG
 
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rJMFF015P15+          AAGCTGTCGTTGGAAGCATGCACCCACGCGGCGCAGAACGAGAGGTTGCCTTTGAGGATT
                      ____________________________________________________________
consensus             AAGCTGTCGTTGGAAGCATGCACCCACGCGGCGCAGAACGAGAGGTTGCCTTTGAGGATT
 
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rJMFF015P15+          GTCGTCCAAGTCCTCTTCTTCGAGCAGCTGCAATTGAGGACATCGATTGCCGGCTGCTTC
                      ____________________________________________________________
consensus             GTCGTCCAAGTCCTCTTCTTCGAGCAGCTGCAATTGAGGACATCGATTGCCGGCTGCTTC
 
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rJMSF005L06+                                 GTCGAGGCAGTTGAGGAGCGGTATGGTGGGAGCNGCA
rJMFF015P15+          CTAGTGTCGGAAAATCTCGAAGGGTCGAGGCAGTTGAGGAGCGGTATGGTGGGAGCAGCA
                      ____________________________________________________________
consensus             CTAGTGTCGGAAAATCTCGAAGGGTCGAGGCAGTTGAGGAGCGGTATGGTGGGAGCAGCA
 
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rJMSF005L06+          GGAAACGAGGGAGGCTGGGCAACAGCCGTAAGGGAAACCCAGGTATTGAAAGTGGGAATG
rJMFF015P15+          GGAAACGAGGGAGGCTGGGCAACAGCCGTAAGGGAAAACCAGGTATTGAAAGTGGGAATG
                      ____________________________________________________________
consensus             GGAAACGAGGGAGGCTGGGCAACAGCCGTAAGGGAAACCCAGGTATTGAAAGTGGGAATG
 
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rJMSF005L06+          GATAACATGAGGCTGCGTGTCTCGGAGCTAGAGCAGGAGTGCTCGAACATGAGGCTGGAG
rJMFF015P15+          GATAACATGAGGCTGCGTGTCTCGGAGCTAGAGCAGGAGTGCTCGAACATGAGGCTGGAG
                      ____________________________________________________________
consensus             GATAACATGAGGCTGCGTGTCTCGGAGCTAGAGCAGGAGTGCTCGAACATGAGGCTGGAG
 
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rJMSF005L06+          ATCGAGAAGTTAGGGCGAGGAAAGGGATCTAGCGCGTGGGGAAATGTGTCCAAGAAGTTC
rJMFF015P15+          ATCGAGAAGTTAGGGCGAGGAAAGGGATCTAGCGCGTGGGGAAATGTGTCCAAGAAGTTC
                      ____________________________________________________________
consensus             ATCGAGAAGTTAGGGCGAGGAAAGGGATCTAGCGCGTGGGGAAATGTGTCCAAGAAGTTC
 
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rJMSF005L06+          GGTTTCAAATTGAAGTCGCAAATGTGCAGTGCTCAGGAGGGGTCTGTTAGCAACCAGNAC
rJMFF015P15+          GGTTTCAAATTGAAGTCGCAAATGTGCAGTGCTCAGGAGGGGTCTGTTAGCAACCAGAAC
                      ____________________________________________________________
consensus             GGTTTCAAATTGAAGTCGCAAATGTGCAGTGCTCAGGAGGGGTCTGTTAGCAACCAGAAC
 
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rJMSF005L06+          AGCACNAACAATAATGTCAAGGCCATAAAGGCTGGGAATGCCAAGGAAAAGCGAGGAAAN
rJMFF015P15+          AGCACAAACAATAATGTCAAGGCCATAAAGGCTGGGAATGCCAAGGAAAAGCGAGGAAAA
                      ____________________________________________________________
consensus             AGCACAAACAATAATGTCAAGGCCATAAAGGCTGGGAATGCCAAGGAAAAGCGAGGAAAA
 
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rJMSF005L06+          CNCCACAAAAATGTATCTATAGANGAATAGCTGTTTGTTAGTTTCAAGATTAGTTTCTTT
rJMFF015P15+          CACCACAAAAATGTATCTATAGATGAATAGCTGTTTGTTAGTTTCAAGATTAGTTTCTTT
                      ____________________________________________________________
consensus             CACCACAAAAATGTATCTATAGATGAATAGCTGTTTGTTAGTTTCAAGATTAGTTTCTTT
 
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rJMSF005L06+          CTTGTTCTTCTTCCTCGTCTAGTCTTATTTGTCTTGTCTTTGCCATGTAATTTCANTAGC
rJMFF015P15+          CTTGTTCTTCTTCCTCGTCTAGTCTTATTTGTCTTGTCTTTGCCATGTAATTTCATTAGC
                      ____________________________________________________________
consensus             CTTGTTCTTCTTCCTCGTCTAGTCTTATTTGTCTTGTCTTTGCCATGTAATTTCATTAGC
 
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rJMSF005L06+          TTTCTCTCTCTGTCAACTTAACATCAATT                               
rJMFF015P15+          TTTCTCTCTCTGTCAACTTAACATCAATTGTACTTTATGCCAACTCATAAACATAAGAAA
                      ____________________________________________________________
consensus             TTTCTCTCTCTGTCAACTTAACATCAATTGTACTTTATGCCAACTCATAAACATAAGAAA