clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF015N10 | Sequence | 571 | 011021 (2) | ref|XP_009598710.1| | 7e-91 | PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Nicotiana | 650 | 011021 (2) | ref|XP_009774664.1| | 1e-80 | PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Nicotiana |
This contig is upended
. : . : . : . : . : . :
JMFF015N10- GAATACACCCCAGACATGATTCTTCAGCTGCCGCGATTTTCTTGTGTTTTCTGTCCTA
____________________________________________________________
consensus GAATACACCCCAGACATGATTCTTCAGCTGCCGCGATTTTCTTGTGTTTTCTGTCCTA
. : . : . : . : . : . :
JMFF015N10- AGCTCCCAATTTGACTCTCCAAACTACTCTCTCAGAACATTCTTCCCAGCTTTTCCATCT
____________________________________________________________
consensus AGCTCCCAATTTGACTCTCCAAACTACTCTCTCAGAACATTCTTCCCAGCTTTTCCATCT
. : . : . : . : . : . :
JMFF015N10- CCGCCGCCACACCGCGCGCTCAAAAAGTTTAGTTCCTAAGCCGTGAGGATGGTGAAGGCC
____________________________________________________________
consensus CCGCCGCCACACCGCGCGCTCAAAAAGTTTAGTTCCTAAGCCGTGAGGATGGTGAAGGCC
. : . : . : . : . : . :
JMFF015N10- ATAATCGCACCGTCGATGCTGTCATCGGACTTCGCCAATCTGGCCTCTGAAGCCGAAAAG
____________________________________________________________
consensus ATAATCGCACCGTCGATGCTGTCATCGGACTTCGCCAATCTGGCCTCTGAAGCCGAAAAG
. : . : . : . : . : . :
JMFF015N10- ATGATCCACTGCGGCGCCGATTGGCTCCATATGGACATCATGGATGGTCACTTTGTACCA
____________________________________________________________
consensus ATGATCCACTGCGGCGCCGATTGGCTCCATATGGACATCATGGATGGTCACTTTGTACCA
. : . : . : . : . : . :
JMFF015N10- AATCTTACAATTGGTGCTCCAGTAATTGAAAGCCTGAGAAAGCACACAAAGGCATATTTA
____________________________________________________________
consensus AATCTTACAATTGGTGCTCCAGTAATTGAAAGCCTGAGAAAGCACACAAAGGCATATTTA
. : . : . : . : . : . :
JMFF015N10- GATTGCCACCTCATGGTGACAAATCCTCTTGACTATGTGGAACCATTAGGAAAAGCTGGT
____________________________________________________________
consensus GATTGCCACCTCATGGTGACAAATCCTCTTGACTATGTGGAACCATTAGGAAAAGCTGGT
. : . : . : . : . : . :
JMFF015N10- GCCTCAGGTTTTACTTTCCATGTTGAGGCATCAAGAGATAATTGGCAGGAACTTGTCCAA
rJMFF015N10+ CCATGTTGAGGCATCAAGAGATAATTGGCAGGAACTTGTCCAA
____________________________________________________________
consensus GCCTCAGGTTTTACTTTCCATGTTGAGGCATCAAGAGATAATTGGCAGGAACTTGTCCAA
. : . : . : . : . : . :
JMFF015N10- AGGATAAAGTCCAAGGGCATGAAACCTGGAGTTTCATTGAAGCCTGGTACACCAATTGAA
rJMFF015N10+ AGGATAAAGTCCAAGGGCATGAAACCTGGAGTTTCATTGAAGCCTGGTACACCAATTGAA
____________________________________________________________
consensus AGGATAAAGTCCAAGGGCATGAAACCTGGAGTTTCATTGAAGCCTGGTACACCAATTGAA
. : . : . : . : . : . :
JMFF015N10- GAAGTCTATCCTCTGCTTGAAGGTGAAAACTCT
rJMFF015N10+ GAAGTCTATCCTCTGCTTGAAGGTGAAAACTCTGTTGAATTGGTTCTGGTGATGACTGTT
____________________________________________________________
consensus GAAGTCTATCCTCTGCTTGAAGGTGAAAACTCTGTTGAATTGGTTCTGGTGATGACTGTT
. : . : . : . : . : . :
rJMFF015N10+ GAACCTGGGTTTGGGGGACAAAAGTTTATGCCTGAAATGATGCAAAAGGTACGCGAACTA
____________________________________________________________
consensus GAACCTGGGTTTGGGGGACAAAAGTTTATGCCTGAAATGATGCAAAAGGTACGCGAACTA
. : . : . : . : . : . :
rJMFF015N10+ AGAAAGAAATATCCATCCCTGGATATAGAGGTGGATGGTGGTTTAGGGCCTTCAACCATT
____________________________________________________________
consensus AGAAAGAAATATCCATCCCTGGATATAGAGGTGGATGGTGGTTTAGGGCCTTCAACCATT
. : . : . : . : . : . :
rJMFF015N10+ GAAATGGCTGCTTCAGCAGGAGCAAACTGCATCGTCGCAGGAAGTTCAGTGTTTGGAGCT
____________________________________________________________
consensus GAAATGGCTGCTTCAGCAGGAGCAAACTGCATCGTCGCAGGAAGTTCAGTGTTTGGAGCT
. : . : . : . : . : . :
rJMFF015N10+ CCAGACCCAGCACATGTGATATCAGTATTGCGAAACAGTGTAGACGGAGCTCAGAAAGGC
____________________________________________________________
consensus CCAGACCCAGCACATGTGATATCAGTATTGCGAAACAGTGTAGACGGAGCTCAGAAAGGC
. : . : . : . : . : . :
rJMFF015N10+ AGCAGTAGTATNTGAGGCAGGCAAGGCCTCCCTGTTGCTATATTGTTTCCTCCGGGTTTT
____________________________________________________________
consensus AGCAGTAGTATNTGAGGCAGGCAAGGCCTCCCTGTTGCTATATTGTTTCCTCCGGGTTTT
. : . : . : . : . : . :
rJMFF015N10+ GTCAAGGAATTGAATTCTTGTTGTACCAGGGAATAATAATATTAAAAAAAAACAATCACA
____________________________________________________________
consensus GTCAAGGAATTGAATTCTTGTTGTACCAGGGAATAATAATATTAAAAAAAAACAATCACA
. : . : . : . : . : . :
rJMFF015N10+ CAAACAAACTTTTTAGCACACTCTCGTGTCATGCTTGTTACTGAGATTACATCAACAATT
____________________________________________________________
consensus CAAACAAACTTTTTAGCACACTCTCGTGTCATGCTTGTTACTGAGATTACATCAACAATT
. : . : . : . : . : . :
rJMFF015N10+ AGGTGGGACTTGAAAGTCTGATAATGTATGGATGGATGTAATAAAAGTGAAGCCATTACC
____________________________________________________________
consensus AGGTGGGACTTGAAAGTCTGATAATGTATGGATGGATGTAATAAAAGTGAAGCCATTACC