Contig 011020:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015I22Sequence569007342 (6)ref|XP_006344987.1|3e-45PREDICTED: transcription factor MYB1R1-like [Solanum tuberosum]222011020 (3)
JMFF031O05Sequence635007342 (6)ref|XP_006344987.1|2e-70PREDICTED: transcription factor MYB1R1-like [Solanum tuberosum]357011020 (3)
JMSF046D05Sequence652007342 (6)ref|XP_006344987.1|7e-63PREDICTED: transcription factor MYB1R1-like [Solanum tuberosum]229011020 (3)

Alignment

This contig is upended


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rJMFF031O05+                                                                CTCCCC
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consensus                                                                   CTCCCC
 
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rJMFF031O05+          CNNGGNCCCNTNATCATTGTCCNTGAGATTGTCCNTGTNGGGNGATCAGAGTCANCCCNC
                      ____________________________________________________________
consensus             CNNGGNCCCNTNATCATTGTCCNTGAGATTGTCCNTGTNGGGNGATCAGAGTCANCCCNC
 
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rJMFF031O05+          NCCCCCTGCCTTCCTGGGGTTCAGTAANGGNGATAGNGTCATCNGNGNGGCANGATTTGG
                      ____________________________________________________________
consensus             NCCCCCTGCCTTCCTGGGGTTCAGTAANGGNGATAGNGTCATCNGNGNGGCANGATTTGG
 
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rJMSF046D05+                                       AAAAAAAAAAAGAAAGAGCAAGTAGGTGGAA
rJMFF031O05+          GAAGANGAAANCNGAAAGGNAAATNTTNAAAAAAAAAAAAGAAAGAGCAAGTAGGTGGAA
rJMFF015I22+                                       AAAAAAAAAAAGAAAGAGCAAGTAGGTGGAA
                      ____________________________________________________________
consensus             GAAGANGAAANCNGAAAGGNAAATNTTNAAAAAAAAAAAAGAAAGAGCAAGTAGGTGGAA
 
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rJMSF046D05+          AATCAGGTAACTGGGGTGTGCAGTATCTGGTGTTTTCTCTTGTACAGACAGGAAATTTGC
rJMFF031O05+          AATCAGGTAACTGGGGTGTGCAGTATCTGGTGTTTTCTCTTGTACAGACAGGAAATTTGC
rJMFF015I22+          AATCAGGTAACTGGGGTGTGCAGTATCTGGTGTTTTCTCTTGTACAGACAGGAAATTTGC
                      ____________________________________________________________
consensus             AATCAGGTAACTGGGGTGTGCAGTATCTGGTGTTTTCTCTTGTACAGACAGGAAATTTGC
 
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rJMSF046D05+          GATGCCTTGCTGTACTTGTTTAATGTTAAGTTGCTGGTATTATATATATTAGAGCTCTGC
rJMFF031O05+          GATGCCTTGCTGTACTTGTTTAATGTTAAGTTGCTGGTATTATATATATTAGAGCTCTGC
rJMFF015I22+          GATGCCTTGCTGTACTTGTTTAATGTTAAGTTGCTGGTATTATATATATTAGAGCTCTGC
                      ____________________________________________________________
consensus             GATGCCTTGCTGTACTTGTTTAATGTTAAGTTGCTGGTATTATATATATTAGAGCTCTGC
 
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rJMSF046D05+          TTATTTATGGTGGTTTGTAATTCTGGAGAAAAC                           
rJMFF031O05+          TTATTTATGGTGGTTTGTAATTCTGGAGAAAACCAAGACT                    
rJMFF015I22+          TTATTTATGGTGGTTTGTAATTCTGGAGAAAACCAAGACTTGAATAACATGAATAAACCT
                      ____________________________________________________________
consensus             TTATTTATGGTGGTTTGTAATTCTGGAGAAAACCAAGACTTGAATAACATGAATAAACCT