Contig 011018:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003N02Sequence679011018 (15)gb|ABM53871.1|5e-51IAA3 [Cestrum elegans]
JMFF010A14Sequence490000207 (8)ref|NP_001275473.1|3e-18Aux/IAA protein [Solanum tuberosum] gb|AAM29182.1| Aux/IAA protein [Solanum tube685011018 (15)gb|ABM53871.1|4e-50IAA3 [Cestrum elegans]
JMFF013A01Sequence613011018 (15)gb|ABM53871.1|2e-38IAA3 [Cestrum elegans]
JMFF014O04Sequence547000207 (8)gb|ABB55368.1|6e-31Aux/IAA protein-like [Solanum tuberosum]771011018 (15)ref|XP_009789143.1|8e-71PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris]
JMFF014O20Sequence527011018 (15)gb|ABM53871.1|2e-32IAA3 [Cestrum elegans]582011018 (15)gb|ABM53871.1|4e-32IAA3 [Cestrum elegans]
JMFF025D16Sequence584000207 (8)gb|ABB55368.1|3e-50Aux/IAA protein-like [Solanum tuberosum]732011018 (15)ref|XP_009789143.1|2e-61PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris]
JMFF031O04Sequence580000207 (8)gb|ABB55368.1|2e-49Aux/IAA protein-like [Solanum tuberosum]747011018 (15)ref|XP_009608764.1|4e-69PREDICTED: auxin-responsive protein IAA8-like [Nicotiana tomentosiformis]
JMFF034K17Sequence505000207 (8)gb|ABB55368.1|3e-28Aux/IAA protein-like [Solanum tuberosum]452011018 (15)
JMFF037F14Sequence531000207 (8)gb|ABB55368.1|5e-31Aux/IAA protein-like [Solanum tuberosum]761011018 (15)ref|XP_009608764.1|5e-69PREDICTED: auxin-responsive protein IAA8-like [Nicotiana tomentosiformis]
JMFS030C09Sequence633011018 (15)ref|XP_009789143.1|1e-103PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris]
JMFS040D01Sequence642011018 (15)ref|XP_009789143.1|1e-103PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris]
JMSF020D17Sequence752011018 (15)ref|XP_011016963.1|4e-84PREDICTED: auxin-responsive protein IAA9-like [Populus euphratica]
JMSF046F07Sequence798011018 (15)ref|XP_009789143.1|2e-100PREDICTED: auxin-responsive protein IAA8-like [Nicotiana sylvestris]796011018 (15)emb|CAC84706.1|3e-80aux/IAA protein [Populus tremula x Populus tremuloides]

Alignment

This contig is upended


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JMFS030C09-                                     CACTGATGAGAACATTCCGAACCGAGTTGGAGGC
JMFS040D01-                                     CACTGATGAGAACATTCCGAACCGAGTTGGAGGC
JMSF046F07-                                    CCACTGATGAGAACATTCCGAACCGAGTTGGAGGC
                      ____________________________________________________________
consensus                                      CCACTGATGAGAACATTCCGAACCGAGTTGGAGGC
 
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JMFS030C09-           GGTGCCCCTGCAACAAA---GGCTCAGGTCGTAGGTTGGCCACCAATTAGATCTTACAGG
JMFS040D01-           GGTGCCCCTGCAACAAA---GGCTCAGGTCGTAGGTTGGCCACCAATTAGATCTTACAGG
JMSF046F07-           GGTGCCCCTGCAACAAACAGGGCTCAGGTCGTAGGTTGGCCACCAATTAGATCTTACAGG
rJMSF020D17+                                                                    GG
                      ____________________________________________________________
consensus             GGTGCCCCTGCAACAAA---GGCTCAGGTCGTAGGTTGGCCACCAATTAGATCTTACAGG
 
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JMFS030C09-           AAGAATACATTAGCTTCTACCCCAAAGAACACTGAAGAAGTTGATGGAAAAGCAGGACCT
JMFS040D01-           AAGAATACATTAGCTTCTACCCCAAAGAACACTGAAGAAGTTGATGGAAAAGCAGGACCT
JMSF046F07-           AAGAATACATTAGCTTCTACCCCAAAGAACACTGAAGAAGTTGATGGAAAAGCAGGACCT
rJMSF020D17+          AAGAATACATTAGCTTCTACCCCAAAGAACACTGAAGAAGTTGATGGAAAAGCAGGACCT
rJMSF046F07+                                CAAAGAACACTGAAGAAGTTGATGGAAAAGCAGGACCT
                      ____________________________________________________________
consensus             AAGAATACATTAGCTTCTACCCCAAAGAACACTGAAGAAGTTGATGGAAAAGCAGGACCT
 
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JMFS030C09-           GGTGCCCTTTTTATTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
JMFS040D01-           GGTGCCCTTTTTATTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
JMSF046F07-           GGTGCCCTTTTTATTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
rJMSF020D17+          GGTGCCCTTTTTATTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
rJMSF046F07+          GGTGCCCTTTTTATTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
rJMFF037F14+                        TAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
rJMFF031O04+                       TTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
rJMFF025D16+                                                      GAGGAAAGTGGACCTG
rJMFF014O04+                   TTTATTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
                      ____________________________________________________________
consensus             GGTGCCCTTTTTATTAAGGTCAGCATGGATGGTGCTCCTTATCTGAGGAAAGTGGACCTG
 
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JMFS030C09-           AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
JMFS040D01-           AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
JMSF046F07-           AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
rJMSF020D17+          AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
rJMSF046F07+          AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
rJMFF037F14+          AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
rJMFF031O04+          AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
rJMFF003N02+                                           GCTCTTGAAAAGATGTTCAGCTGCTTT
rJMFF025D16+          AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
rJMFF010A14+                                            CTCTTGAAAAGATGTTCAGCTGCTTT
rJMFF014O04+          AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
                      ____________________________________________________________
consensus             AGAATGTACTCTGCATACCAGGAACTCTCTTCTGCTCTTGAAAAGATGTTCAGCTGCTTT
 
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JMFS030C09-           ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
JMFS040D01-           ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
JMSF046F07-           ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMSF020D17+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMFF013A01+                                   GAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMSF046F07+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMFF037F14+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMFF031O04+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMFF003N02+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMFF025D16+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
rJMFF010A14+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
JMFF014O20-                                                                     AT
rJMFF014O20+                                                                    AT
rJMFF014O04+          ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
                      ____________________________________________________________
consensus             ACCATTGGTCAATATGGTGCTCATGGAAATGAGATTTTAAGTGAGAGCAAATTGAAGGAT
 
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JMFS030C09-           TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
JMFS040D01-           TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
JMSF046F07-           TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMSF020D17+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF013A01+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMSF046F07+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF037F14+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF031O04+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF003N02+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF025D16+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF010A14+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
JMFF014O20-           TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF014O20+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
rJMFF014O04+          TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
                      ____________________________________________________________
consensus             TTGCTTCATGGATCTGAATATGTCCTCACTTATGAGGATAAGGATGGCGATTGGATGCTT
 
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JMFS030C09-           GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
JMFS040D01-           GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
JMSF046F07-           GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMSF020D17+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF013A01+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMSF046F07+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF037F14+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF031O04+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF003N02+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF025D16+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF010A14+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
JMFF014O20-           GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF014O20+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
rJMFF014O04+          GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
                      ____________________________________________________________
consensus             GTTGGTGATGTTCCTTGGGAGATGTTCATTGATACCTGTAAGAGGCTTAGAATCATGAAG
 
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JMFS030C09-           GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
JMFS040D01-           GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
JMSF046F07-           GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMSF020D17+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF013A01+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMSF046F07+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF034K17+                             TGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF037F14+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF031O04+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF003N02+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF025D16+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF010A14+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
JMFF014O20-           GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF014O20+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
rJMFF014O04+          GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
                      ____________________________________________________________
consensus             GGTTCGGATGCCATTGGACTGGCCCCAAGGGCCATGGAAAAATGCCGAACCAGGGTATAA
 
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JMFS030C09-           GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
JMFS040D01-           GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
JMSF046F07-           GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMSF020D17+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF013A01+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMSF046F07+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF034K17+          GTAATATCTGCACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF037F14+          GTAATATCTGCACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF031O04+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF003N02+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF025D16+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF010A14+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
JMFF014O20-           GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF014O20+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
rJMFF014O04+          GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
                      ____________________________________________________________
consensus             GTAATATCTACACATGATTGAAGCTATCCATCCATCCGACAGATATCACACAGAGGAAGC
 
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JMFS030C09-           CATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
JMFS040D01-           AATGGGTGATCTTANAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
JMSF046F07-           AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMSF020D17+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF013A01+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAATTGATACACTCACCGACTGGATGTTG
rJMSF046F07+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF034K17+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF037F14+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF031O04+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF003N02+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF025D16+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF010A14+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
JMFF014O20-           AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF014O20+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
rJMFF014O04+          AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
                      ____________________________________________________________
consensus             AATGGGTGATCTTAAAACTTGATCCTTGTTTGAGTTGATACACTCACCGACTGGATGTTG
 
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JMFS030C09-           GC                                                          
JMFS040D01-           GCTTTGGATAG                                                 
JMSF046F07-           GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMSF020D17+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF013A01+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMSF046F07+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF034K17+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF037F14+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF031O04+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF003N02+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF025D16+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF010A14+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
JMFF014O20-           GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF014O20+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
rJMFF014O04+          GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
                      ____________________________________________________________
consensus             GCTTTGGATAGCACATCATGGGTAGATGGTTTACCTTGTTGTTATATTTACATTCTCGTA
 
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JMSF046F07-           ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMSF020D17+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF013A01+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMSF046F07+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF034K17+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF037F14+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF031O04+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF003N02+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF025D16+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF010A14+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
JMFF014O20-           ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF014O20+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
rJMFF014O04+          ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
                      ____________________________________________________________
consensus             ATTGATGTTACCTAAGCTTTGCATCCTGTCTAATACGGAGAACTTGCTAGAACCCTTCTG
 
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JMSF046F07-           GGAGTTCATCTTANACTCGCAATGTGTGGGGTGAATTTGTGAG                 
rJMSF020D17+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF013A01+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMSF046F07+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF034K17+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF037F14+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF031O04+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF003N02+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF025D16+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF010A14+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAGTAG
JMFF014O20-           GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF014O20+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
rJMFF014O04+          GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
                      ____________________________________________________________
consensus             GGAGTTCATCTTAGACTCGCAATGTGTGGGGTGAATTTGTGAGTTCATTTAGATGAATAG
 
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rJMSF020D17+          TATTAGTATGTAAAGCGGATTGTTGAACTT                              
rJMFF013A01+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMSF046F07+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMFF034K17+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMFF037F14+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMFF031O04+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMFF003N02+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMFF025D16+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMFF010A14+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
JMFF014O20-           TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAA               
rJMFF014O20+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
rJMFF014O04+          TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
                      ____________________________________________________________
consensus             TATTAGTATGTAAAGCGGATTGTTGAACTTTATGTGTGTACTCAAGTACTAAGTTTTCTG
 
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rJMFF013A01+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAG                      
rJMSF046F07+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAG                      
rJMFF034K17+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTTTCTTTACTTT          
rJMFF037F14+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTTTCTTTACTTTGCATA     
rJMFF031O04+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTT                    
rJMFF003N02+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTTTCTTTACTTTGC        
rJMFF025D16+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTTTCTTTACTTTGCATA     
rJMFF010A14+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTTTCTTTACTTTGCATA     
rJMFF014O20+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTT                    
rJMFF014O04+          TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTTTCTTTACTTTGCATAGAATA
                      ____________________________________________________________
consensus             TTAGCTTGATTCCTCAGTCTGTGCACCAAAACACCAAGTTTCTTTACTTTGCATAGAATA